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Optimized Analysis of DNA Methylation and Gene Expression from Small, Anatomically-defined Areas of the Brain
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A new robust AI/ML based model for accurate forensic age estimation using DNA methylation markers.

Jinsu Ann Mathew1,2, Geetha Paul2, Joe Jacob1

  • 1Department of Physics, Newman College (Affiliated to Mahatma Gandhi University), Thodupuzha, Kerala, India.

Forensic Science, Medicine, and Pathology
|March 14, 2025
PubMed
Summary

Forensic science can now accurately estimate age using epigenetic markers at 12 specific CpG sites. This method enhances criminal investigations and human identification with reliable, efficient age prediction.

Keywords:
Artificial neural network (ANN)Attention networkConvolutional neural network (CNN)DNA methylationForensic ageMachine learning

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Area of Science:

  • Genetics and Forensic Science
  • Epigenetics and Molecular Biology

Background:

  • Epigenetic markers, specifically DNA methylation at CpG sites, are crucial for accurate age prediction.
  • These markers are increasingly vital in forensic science for criminal investigations and human identification.

Purpose of the Study:

  • To identify a minimal set of CpG sites for robust and accurate forensic age estimation.
  • To validate the predictive accuracy of selected CpG sites across diverse populations and conditions.

Main Methods:

  • Screened 476,366 CpG sites based on high correlation with chronological age (>0.85) and low mutual correlation (<0.15).
  • Selected 12 CpG sites associated with genes including FHL2, ELOVL2, and TRIM59.
  • Utilized three different neural network models to assess predictive accuracy, independent of model specifics.

Main Results:

  • Identified 12 CpG sites demonstrating high accuracy for age prediction.
  • Neural network models achieved comparable accuracy across diverse populations, genders, and health statuses.
  • Validation on independent datasets confirmed the reliability of the selected CpG sites for age estimation.

Conclusions:

  • A minimal set of 12 CpG sites provides a robust and efficient solution for forensic age estimation.
  • This approach significantly enhances the precision and reliability of forensic investigations.
  • The findings support the use of epigenetic markers for accurate age prediction in forensic contexts.