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Updated: May 22, 2025

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How to Measure Cortical Folding from MR Images: a Step-by-Step Tutorial to Compute Local Gyrification Index
Published on: January 2, 2012
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Biophysical basis for brain folding and misfolding patterns in ferrets and humans
Gary P T Choi1, Chunzi Liu2, Sifan Yin2
1Department of Mathematics, The Chinese University of Hong Kong, Hong Kong.
Biorxiv : the Preprint Server for Biology
|March 17, 2025
Summary
Understanding brain development requires linking genes to brain structure and function. This study uses ferret models and simulations to reveal how genetic factors and mechanical forces influence brain gyrification and malformations in humans.
Area of Science:
- Neurodevelopmental Biology
- Computational Neuroscience
- Comparative Neuroanatomy
Background:
- Understanding neurodevelopment necessitates bridging molecular genetics with macroscopic brain structures and neurological function.
- Cortical gyrification, the folding of the cerebral cortex, is crucial for higher cognitive functions.
- Ferret models offer valuable insights into cortical morphogenesis due to their brain structure.
Purpose of the Study:
- To elucidate the multiscale processes connecting genetic factors to brain development and function.
- To investigate the mechanical principles governing brain gyrification using computational and physical models.
- To identify key drivers of cortical dysmorphogenesis and their relevance to human brain malformations.
Main Methods:
- Magnetic resonance imaging (MRI) of ferret brains.
- In vitro physical gel modeling of brain tissue.
- In silico numerical simulations of brain gyrification.
- Analysis of genetically manipulated animal models.
Main Results:
- Cerebral cortical thickness and expansion rate identified as primary drivers of abnormal brain development (dysmorphogenesis).
- In silico models successfully simulated normal gyrification and allowed examination of developmental aberrations.
- Analogous cortical malformations in ferrets and humans were explained, linked to specific genetic defects.
Conclusions:
- Genetic causes and mechanical factors (brain geometry, differential growth) interact to drive brain morphogenesis.
- Computational and experimental models provide a unified perspective on brain development across species.
- This research deepens the mechanistic understanding of neurodevelopment and cortical malformations.
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