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Towards prediction of pseudo-normal SPECT image data using variational autoencoder.

Katerina Dudasova1,2, Jiri Trnka3

  • 1Czech Technical University in Prague, Faculty of Nuclear Sciences and Physical Engineering, Prague, Czech Republic. katerina.dudasova7@gmail.com.

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Summary

This study shows a variational autoencoder (VAE) can create pseudo-normal brain SPECT scans from abnormal ones. This technique aids in harmonizing medical imaging data for better analysis.

Keywords:
SPECT[123I]-FP-CITharmonizationvariational autoencoder

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Area of Science:

  • Medical Imaging
  • Radiochemistry
  • Artificial Intelligence

Background:

  • Single Photon Emission Computed Tomography (SPECT) imaging can produce abnormal results.
  • Harmonizing SPECT data is crucial for accurate analysis.
  • Generating pseudo-normal SPECT data is a novel approach.

Purpose of the Study:

  • To assess the feasibility of creating pseudo-normal SPECT data from abnormal images.
  • To develop an on-the-fly data harmonization technique using pseudo-normal images.
  • To evaluate the performance of a Variational Autoencoder (VAE) for this task.

Main Methods:

  • A VAE model was developed to process 2D sinograms of brain SPECT ([123I]-FP-CIT).
  • The VAE was trained on simulated SPECT data derived from MR scans with varying uptake levels.
  • Performance was measured using Dice Similarity Coefficient (DSC) and specific binding ratio.

Main Results:

  • The VAE achieved a mean DSC of 80% for the left basal ganglia and 84% for the right.
  • The model demonstrated high consistency in predicting basal ganglia shape (DSC coefficient of variation < 1.1%).

Conclusions:

  • VAE effectively estimates individualized pseudo-normal radiotracer distribution from abnormal SPECT images.
  • This method shows promise for harmonizing SPECT data.
  • Limitations include limited real MR data and a simplified simulation setup.