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Updated: May 21, 2025

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
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Hypergraph reconstruction from dynamics.

Robin Delabays1, Giulia De Pasquale2, Florian Dörfler3

  • 1School of Engineering, University of Applied Sciences of Western Switzerland HES-SO, Sion, Switzerland.

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|March 20, 2025
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Summary
This summary is machine-generated.

Researchers developed a new method to infer complex network structures, including non-pairwise interactions, from time-series data. This model-free approach reconstructs hypergraphs and simplicial complexes, applicable to systems lacking mathematical descriptions.

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Area of Science:

  • Complex systems analysis
  • Network science
  • Computational neuroscience

Background:

  • Inferring network structure from dynamics is crucial for understanding complex systems.
  • Existing methods often struggle with non-pairwise interactions and require detailed system knowledge.
  • Advanced mathematical models are needed to capture intricate system interdependencies.

Purpose of the Study:

  • To develop a novel, model-free algorithm for inferring network structures, including higher-order interactions.
  • To reconstruct complex topologies like hypergraphs and simplicial complexes from time-series data.
  • To apply the method to real-world data, such as brain activity, to uncover hidden network properties.

Main Methods:

  • Utilizing sparse identification of nonlinear dynamics (SINDy) for network inference.
  • Developing an algorithm to reconstruct hypergraphs and simplicial complexes from time-series data.
  • Benchmarking the method on synthetic data from Kuramoto and Lorenz dynamics.

Main Results:

  • Successfully reconstructed network structures, including non-pairwise interactions, from synthetic data.
  • Demonstrated the model-free nature of the algorithm, requiring no prior knowledge of node dynamics or coupling functions.
  • Applied the method to resting-state electroencephalography (EEG) data to infer effective brain connectivity.

Conclusions:

  • The developed SINDy-based method effectively infers complex network structures and non-pairwise interactions from time-series data.
  • This approach offers a powerful tool for analyzing systems without established mathematical models, such as biological networks.
  • Non-pairwise interactions play a significant role in shaping macroscopic brain dynamics, as revealed by EEG data analysis.