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Updated: May 21, 2025

Author Spotlight: Developing Tools to Tune the Activity of Tyrosine Phosphatases
Published on: September 6, 2024
Reversible Optical Control of Receptor Tyrosine Kinase Activity and ERK Dynamics Using Azobenzene-Carrying DNA
Masahiro Wakano1, Masaya Tsunoda2, Keiji Murayama3
1Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.
Abstract:
Receptor tyrosine kinases (RTKs) play a pivotal role in cell signaling through their activation via dimerization. Recent studies have demonstrated the importance of the temporal dynamics of RTK activity and downstream signals, such as ERK, in determining the cell fate. To better understand these dynamics, it is essential to develop methods capable of controlling the RTK activity with high temporal resolution. However, techniques for precisely modulating the activity of endogenous RTKs without requiring genetic modification remain insufficiently established. In this study, we developed a DNA aptamer agonist, Met-azo-aptamer, which enables reversible optical control of the activity of the c-Met receptor, a member of the RTK family. This was achieved by incorporating azobenzene, a photoisomerizable molecule, into a DNA aptamer that binds to c-Met. This design allows light-induced switching between the active and inactive structures of the aptamer. When the aptamer was applied to HeLa cells and exposed to ultraviolet or blue light, phosphorylation signals within the cells were activated in response to the light patterns. Furthermore, by variation of the light patterns, the Met-azo-aptamer successfully controlled the timing, amplitude, and duration of downstream ERK activation. The Met-azo-aptamer developed in this study offers a high-resolution method for investigating the relationship between RTK activation patterns and cell function or fate.
Insights
Scientists developed a light-controlled DNA aptamer to precisely regulate receptor tyrosine kinase (RTK) activity. This new tool, Met-azo-aptamer, allows optical control over cell signaling pathways like ERK, advancing cell fate research.
Area of Science:
- Molecular Biology
- Cell Signaling
- Biotechnology
Background:
- Receptor tyrosine kinases (RTKs) are crucial for cell signaling and cell fate determination.
- Temporal dynamics of RTK activity significantly influence cellular responses.
- Existing methods for precise, non-genetic control of endogenous RTKs are limited.
Purpose of the Study:
- To develop a method for high-temporal-resolution control of endogenous RTK activity.
- To investigate the role of RTK activation dynamics in cell signaling and fate.
- To create a tool for precise modulation of c-Met receptor activity.
Main Methods:
- Designed a DNA aptamer agonist (Met-azo-aptamer) incorporating a photoisomerizable azobenzene molecule.
- Engineered the aptamer for reversible optical control of c-Met receptor binding and activity.
- Applied the Met-azo-aptamer to HeLa cells and used UV/blue light to modulate c-Met activity.
Main Results:
- The Met-azo-aptamer enabled light-induced activation and deactivation of c-Met receptor signaling.
- Cellular phosphorylation signals were modulated in response to specific light patterns.
- The timing, amplitude, and duration of downstream ERK activation were precisely controlled by varying light patterns.
Conclusions:
- Met-azo-aptamer provides reversible optical control over c-Met receptor activity.
- This tool offers a high-resolution method to study RTK activation dynamics.
- The findings facilitate research into the relationship between RTK signaling patterns and cell function/fate.
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