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Updated: May 20, 2025

Analyzing Large Protein Complexes by Structural Mass Spectrometry
Published on: June 19, 2010
High performance charge detection mass spectrometry without ultra-high vacuum
Emeline Hanozin1, Conner C Harper1, Jacob S Jordan1
1Department of Chemistry, University of California, Berkeley, California, 94720-1460, USA. erw@berkeley.edu.
Charge detection mass spectrometry (CDMS) now works at higher pressures, simplifying measurements. This advance allows accurate mass determination for large molecules and nanoparticles without ultra-high vacuum.
Area of Science:
- Analytical Chemistry
- Mass Spectrometry
- Physical Chemistry
Background:
- Charge detection mass spectrometry (CDMS) traditionally requires ultra-high vacuum (UHV) (<10-9 Torr).
- UHV conditions are expensive and cumbersome, limiting broader application of CDMS.
- Collisions with background gas can interfere with accurate ion measurements in CDMS.
Purpose of the Study:
- To develop and validate a CDMS method capable of accurate measurements at significantly higher pressures than previously possible.
- To investigate the impact of elevated pressures on ion behavior and mass measurement accuracy in an electrostatic trap.
- To determine the feasibility of CDMS for analyzing large biomolecules and nanoparticles under non-UHV conditions.
Main Methods:
- Utilized an electrostatic trap designed to accommodate a wide range of ion energies.
- Implemented a dynamic ion signal analysis method for data processing.
- Performed CDMS measurements on antibody complexes, viruses, and polystyrene nanoparticles at pressures up to 1 × 10-6 Torr.
Main Results:
- Achieved accurate CDMS mass measurements at pressures up to 1 × 10-6 Torr, several orders of magnitude higher than prior limits.
- Successfully measured masses of large ions, including antibody complexes (~800 kDa), adeno-associated viruses (~4.8 MDa), and nanoparticles (35–330 MDa).
- Demonstrated that larger ions exhibit greater robustness to higher pressures, with sufficient smaller ions surviving for accurate mass determination.
Conclusions:
- CDMS measurements can be accurately performed at pressures up to 1 × 10-6 Torr using an electrostatic trap and dynamic analysis.
- This advancement significantly reduces the need for expensive and complex ultra-high vacuum systems.
- The findings pave the way for more accessible and routine mass analysis of large molecules and nanoparticles.
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