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Scalable High Throughput Selection From Phage-displayed Synthetic Antibody Libraries
Published on: January 17, 2015
Małgorzata Lisowska1, Erin G Worrall2, Filip Zavadil-Kokas3
1International Centre for Cancer Vaccine Science, University of Gdansk, Gdansk, Poland.
Abstract:
The development of canine immunotolerant monoclonal antibodies can accelerate the invention of new medicines for both canine and human diseases. We develop a methodology to clone the naive, somatically mutated variable domain repertoire from canine B cell mRNA using 5'RACE PCR. A set of degenerate primers were then designed and used to clone variable domain genes into archival "holding" plasmid libraries. These archived variable domain genes were then combinatorially ligated to produce a scFv M13 phage library. Next-generation long-read and short-read DNA sequencing methodologies were developed to annotate features of the cloned library including CDR diversity and IGHV/IGKV/IGLV subfamily distribution. A synthetic immunoglobulin G was developed from this scFv library to the canine immune checkpoint receptor PD-1. This synthetic platform can be used to clone and annotate archived antibody variable domain genes for use in perpetuity in order to develop improved preclinical models for the treatment of complex human diseases.
Insights
Researchers developed a novel method to clone canine antibody genes, creating a versatile platform for discovering new medicines for both canine and human diseases.
Area of Science:
- Immunology and Biotechnology
- Canine and Comparative Medicine
Background:
- Developing immunotolerant monoclonal antibodies is crucial for advancing veterinary and human medicine.
- Canine models offer unique insights into human disease pathogenesis and treatment.
Purpose of the Study:
- To establish a robust methodology for cloning and archiving the canine variable domain antibody repertoire.
- To create a synthetic antibody platform for developing novel therapeutics and preclinical models.
Main Methods:
- Utilized 5'RACE PCR to clone naive, somatically mutated variable domain repertoire from canine B cell mRNA.
- Developed degenerate primers for cloning variable domain genes into archival plasmid libraries.
- Constructed a single-chain variable fragment (scFv) M13 phage library through combinatorial ligation.
- Employed next-generation sequencing (long-read and short-read) for library annotation, including CDR diversity and immunoglobulin gene subfamily distribution.
Main Results:
- Successfully cloned and archived a diverse canine antibody variable domain repertoire.
- Annotated library features, revealing CDR diversity and IGHV/IGKV/IGLV subfamily distribution.
- Generated a synthetic immunoglobulin G targeting the canine immune checkpoint receptor PD-1.
Conclusions:
- The developed synthetic platform enables perpetual cloning and annotation of antibody variable domain genes.
- This platform facilitates the development of improved preclinical models for complex human diseases.
- The methodology accelerates the discovery of novel canine and human therapeutics.
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