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Updated: May 20, 2025

Human Liver Microphysiological System for Assessing Drug-Induced Liver Toxicity In Vitro
Published on: January 31, 2022
Epigenetic modifications in drug-induced liver injury: A systematic review
Romina Lorena de Los Santos-Fernández1, Antonio Segovia-Zafra1,2, Guillermo Paz-López3
1Servicio de Aparato Digestivo y Farmacología clínica, Instituto de Investigación Biomédica de Málaga-IBIMA Plataforma BIONAND, Hospital Universitario Virgen de la Victoria, Universidad de Málaga, Málaga, Spain.
Abstract:
Genetic susceptibility has been identified in idiosyncratic drug-induced liver injury, a potentially severe adverse reaction towards drugs, herbal products and dietary supplements. However, its occurrence cannot be fully explained by the presence of genetic variants in specific genes, suggesting that other factors are involved. Drug-induced liver injury epigenetic signatures could help explain genetic regulatory mechanisms behind this disease and might provide disease biomarkers. This systematic review aims to analyse all available information on epigenetic risk association studies in drug-induced liver injury. The main inclusion criterion was population studies on idiosyncratic drug-induced liver injury with significant risk association analysis between drug-induced liver injury and an epigenetic regulation mechanism. Out of the 7 included articles, 6 focused on DNA methylation and 1 on long noncoding RNA. All of the studies were on antituberculosis drug-induced liver injury and came from Asia. CpG site methylation in the CYP2D6 (odds ratio: 9.19, 95% confidence interval: 3.26-25.89, P < .001) and NAT2 (odds ratio: 8.37, 95% confidence interval: 2.39-29.32, P = .001) promoters conferred the highest risk. Hypomethylation of LINE-1 and Alu transposable elements has potential as antituberculosis drug-induced liver injury biomarkers, showing an area under the curve value of 0.94. To conclude, the studies mainly focused on DNA methylation modifications associated with antituberculosis drug-induced liver injury, with all of them coming from Asia, where tuberculosis is a public health burden. Despite the lack of knowledge in this area, the evidence has shown that DNA methylation alterations in antituberculosis drug-induced liver injury could have potential as a new diagnostic and therapeutic target.
Insights
Epigenetic factors, particularly DNA methylation, are linked to drug-induced liver injury from tuberculosis drugs. Alterations in specific gene promoters and transposable elements may serve as biomarkers for this condition.
Area of Science:
- Pharmacogenomics
- Epigenetics
- Hepatology
Background:
- Idiosyncratic drug-induced liver injury (DILI) is a severe adverse reaction to various substances.
- Genetic factors alone do not fully explain DILI occurrence, indicating other regulatory mechanisms are involved.
- Epigenetic signatures, such as DNA methylation and long noncoding RNA, may elucidate genetic regulatory pathways in DILI and serve as biomarkers.
Purpose of the Study:
- To systematically review and analyze existing studies on epigenetic risk associations in drug-induced liver injury.
- To identify specific epigenetic mechanisms and genes implicated in DILI.
- To assess the potential of epigenetic modifications as biomarkers for DILI.
Main Methods:
- Systematic literature review.
- Inclusion of population studies analyzing risk associations between DILI and epigenetic regulation.
- Focus on studies investigating DNA methylation and long noncoding RNA in DILI.
Main Results:
- Six of the seven included studies focused on DNA methylation, and one on long noncoding RNA.
- All studies investigated antituberculosis drug-induced liver injury (ATB-DILI) and originated from Asia.
- CpG site methylation in CYP2D6 and NAT2 promoters showed the highest risk for ATB-DILI.
- Hypomethylation of LINE-1 and Alu elements demonstrated potential as ATB-DILI biomarkers (AUC 0.94).
Conclusions:
- DNA methylation modifications are the primary epigenetic alterations studied in relation to ATB-DILI.
- The research predominantly originates from Asia, highlighting a significant public health concern.
- Epigenetic alterations, especially DNA methylation changes in specific genes and transposable elements, show promise as diagnostic and therapeutic targets for ATB-DILI.
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