Establishment of a Visual Gene Chip Method for the Simultaneous Detection of Seven Waterfowl Virus Pathogens

Goose parvovirus (GPV), duck enteritis virus (DEV), Muscovy duck parvovirus (MDPV), duck hepatitis A virus type 1 (DHAV-1), duck hepatitis A virus type 3 (DHAV-3), duck Tembusu virus (DTMUV), and novel duck reovirus (NDRV) are significant pathogens that spread extensively among waterfowl populations, causing economic losses for the waterfowl industry. In order to detect seven pathogens simultaneously, a visual gene chip for the detection of multiple waterfowl disease pathogens was developed in this study. The gene chip was capable of specifically amplifying GPV, DEV, MDPV, DHAV-1, -DHAV-3, DTMUV, and NDRV. The sensitivity results showed that the lowest detection limit of the gene chip was 1 copy/μL for single and mixed samples. The reproducibility and stability tests demonstrated that the gene chip developed in this experiment exhibited not only excellent reproducibility but also remarkable stability, remaining functional for a minimum of 180 days. Compared to qPCR methods, the results showed that the sensitivity of the gene chip was slightly better than that of the qPCR method in detecting both single and mixed pathogens of the seven viruses. In this study, a total of 210 clinical samples were detected by the gene chip and qPCR, respectively, and the results of the two methods had a concordance rate of 98.1~100%, with a kappa value of 0.952, indicating that the consistency of the two detection methods was good.