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Updated: May 20, 2025

Basic Research in Plasma Medicine - A Throughput Approach from Liquids to Cells
Published on: November 17, 2017
By any other name: searching for the right plasma nomenclature
Caroline Corcoran1, Rachel Bennett2, Vandana Miller1
1Laboratory for Translational Plasma Research, Department of Microbiology and Immunology, Drexel College of Medicine, Philadelphia, PA 19102 USA.
Abstract:
Non-thermal plasma, cold plasma, and atmospheric-pressure plasma are few terms used to describe the plasma used in plasma medicine research. The resulting ambiguity hampers literature searches, confuses discussion, and complicates collaborations. To assess the full breadth of this problem, we designed a natural language processing model (NLP) that surveyed approximately 15,000 papers in response to the query "plasma medicine" indexed in PubMed between 2020-2022. Our NLP was constructed and executed using the Hugging Face transformers API and PubMed BERT pretrained model. We used this model to determine the prevalence and to assess the utility of each term for searching literature relevant to plasma medicine. The effectiveness of each term was measured by precision, the ability to discriminate relevant and irrelevant literature; and recall, the ability to retrieve relevant literature. Each term was given a combined effectiveness score of 0-1 (1 = ideal effectiveness) accounting for precision, recall, sample size, and model confidence. Our model showed that of the twelve commonly used terms analyzed, none received a combined effectiveness score over 0.025. We concluded that there is no universal term for "plasma" that provides a satisfactory representation of literature. These results highlight the need for standardization of nomenclature in plasma medicine.
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