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Comprehensive Molecular and Genomic Analysis of NCI-MATCH Subprotocol Y: Capivasertib in Patients With an AKT1
Carolyn K McCourt1, Jacob Gross2, Kevin Kalinsky3
1Department of Obstetrics & Gynecology, Washington University School of Medicine, St Louis, MO.
Purpose:
NCI-MATCH (EAY131) is a precision medicine trial using genomic testing to allocate patients with advanced malignancies to targeted treatments. Arm Y evaluated capivasertib, a pan AKT inhibitor, in patients with an AKT1 E17K-mutated tumor. Here, we report on the translational objectives of the study, a molecular and genomic analysis of specimens to identify potential biomarkers of response or resistance to capivasertib.
Methods:
Eligible patients had AKT1 E17K-mutated metastatic tumors that progressed with standard treatment and received capivasertib 480 mg orally twice daily for 4 days on and 3 days off weekly in 28-day cycles. The primary end point was objective response rate (ORR). We performed whole-exome sequencing, RNA sequencing, and gene set and pathway enrichment analysis on 25 pretreatment tissue samples and evaluated findings in responders (complete response [CR], n = 0, and partial response, n = 9) and nonresponders (stable disease, n = 13, and progressive disease, n = 3).
Results:
The ORR was 28.6% (10 of 35) in the reported primary trial and 36% (9 of 25) in this translational cohort. Mutations in the TP53 gene were more frequent in responders, whereas the PI3K/AKT/mTOR pathway genes TYRO3, SYNJ1, and CDIPT were significantly altered in nonresponders. DNA repair, p53, E2F, and Wnt-beta catenin pathways were enriched in the responder group. Unsupervised clustering of gene expression identified five genes, ANKRD30A, SUSD4, TTC6, POTEJ, and POTEI, that were significantly higher in responders and lower in nonresponders. In addition, EGFR expression was significantly increased in nonresponders.
Conclusion:
In patients with AKT1 E17K-mutated tumors, capivasertib achieved a clinically significant ORR. TP53 mutations appear to be associated with response, whereas certain additional PI3K/AKT/mTOR pathway mutations and EGFR overexpression appear to be associated with nonresponse to capivasertib. Further investigation of predictive biomarkers is warranted.
Insights
Capivasertib showed a 36% objective response rate in advanced tumors with AKT1 E17K mutations. TP53 mutations may predict response, while PI3K/AKT/mTOR pathway alterations and EGFR overexpression suggest resistance.
Area of Science:
- Oncology
- Genomics
- Precision Medicine
Background:
- NCI-MATCH (EAY131) is a precision medicine trial matching advanced cancer patients to targeted therapies.
- Arm Y investigated capivasertib, a pan AKT inhibitor, for tumors with AKT1 E17K mutations.
Purpose of the Study:
- To conduct a molecular and genomic analysis of patient specimens.
- To identify potential biomarkers for response or resistance to capivasertib.
Main Methods:
- Whole-exome and RNA sequencing of 25 pretreatment tumor samples.
- Analysis of gene set and pathway enrichment in responders versus nonresponders.
- Evaluation of objective response rate (ORR) as the primary endpoint.
Main Results:
- Capivasertib demonstrated a 36% ORR in the translational cohort (9/25 patients).
- TP53 mutations were more frequent in responders.
- PI3K/AKT/mTOR pathway genes (TYRO3, SYNJ1, CDIPT) and EGFR overexpression were associated with nonresponse.
Conclusions:
- Capivasertib achieved a clinically significant ORR in AKT1 E17K-mutated tumors.
- TP53 mutations may predict response to capivasertib.
- Further research into predictive biomarkers for capivasertib is necessary.
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