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optRF: Optimising random forest stability by determining the optimal number of trees
Thomas M Lange1, Mehmet Gültas2,3, Armin O Schmitt4,3
1Breeding Informatics Group, Georg-August University, Margarethe Von Wrangell-Weg 7, 37075, Göttingen, Germany. thomas.lange@uni-goettingen.de.
Random forests, a machine learning technique, can produce different models from the same data. This study introduces a method to quantify this non-determinism, finding an optimal number of trees for stable predictions and efficient computation.
Area of Science:
- Machine Learning
- Data Science
- Computational Statistics
Background:
- Random forest is a prominent machine learning algorithm for big data analysis.
- A key characteristic of random forest is its non-deterministic nature, potentially leading to varied model outputs from identical datasets.
- This variability can significantly impact decision-making processes reliant on these models.
Purpose of the Study:
- To develop a method for quantifying the impact of non-determinism in random forest models.
- To assess how non-determinism affects predictions, variable importance estimates, and subsequent decisions.
- To identify an optimal number of trees for random forest models to balance stability and computational cost.
Main Methods:
- Introduced a novel method to quantify the non-determinism of random forest models.
- Analyzed the relationship between the number of trees and model stability.
- Evaluated the impact on predictions and variable importance estimates.
- Developed the R package optRF to model the tree-number-stability relationship.
Main Results:
- Increasing the number of trees in random forests improves model stability in a non-linear fashion.
- Computational time increases linearly with the number of trees.
- An optimal number of trees exists that maximizes stability without excessive computational overhead.
Conclusions:
- Non-determinism in random forests necessitates careful consideration for reliable decision-making.
- The R package optRF provides data-driven recommendations for optimal tree numbers.
- Balancing model stability and computational efficiency is achievable through optimized tree selection.
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