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Comparative analysis of large language models on rare disease identification
Guangyu Ao1,2, Min Chen1, Jing Li1
1Department of Nephrology, Chengdu First People's Hospital, No.18 Wanxiang North Road, High-tech District, Chengdu, 610095, Sichuan, China.
Orphanet Journal of Rare Diseases
|April 1, 2025
Summary
Large language models (LLMs) show promise in diagnosing rare diseases, outperforming human physicians in a recent study. Claude 3.5 Sonnet achieved the highest accuracy, offering a potential tool for improving diagnostic speed and accuracy.
Area of Science:
- Medical Informatics
- Artificial Intelligence in Medicine
- Rare Disease Diagnostics
Background:
- Diagnosing rare diseases presents significant challenges, including low prevalence, varied symptoms, and limited physician awareness, often resulting in diagnostic delays and misdiagnoses.
- The study investigates the diagnostic capabilities of advanced large language models (LLMs) for rare diseases, comparing their performance against human clinicians.
Discussion:
- Four LLMs (ChatGPT-4o, Claude 3.5 Sonnet, Gemini Advanced, Llama 3.1 405B) were evaluated on 152 real-world rare disease cases from the Chinese Medical Case Repository.
- LLMs demonstrated superior performance compared to human physicians in identifying rare diseases.
- Claude 3.5 Sonnet achieved the highest diagnostic accuracy (78.9%), significantly exceeding the human physician accuracy rate (26.3%).
Key Insights:
- LLMs can significantly enhance the accuracy and efficiency of rare disease diagnosis.
- Claude 3.5 Sonnet emerged as a leading AI tool for rare disease identification.
- AI-powered diagnostic support holds potential for improving healthcare, especially in resource-limited settings.
Outlook:
- Further clinical validation and rigorous testing are essential to confirm the efficacy and safety of LLMs in rare disease diagnostics.
- Addressing ethical considerations and data privacy is crucial for the responsible integration of AI tools into clinical practice.
- LLMs could serve as valuable assistive tools for clinicians, potentially reducing diagnostic odysseys for patients with rare conditions.

