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Updated: Apr 28, 2026

Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
Published on: January 7, 2019
Neurological disability and brain grey matter atrophy in primary progressive multiple sclerosis are determined by
Theodoros Ladopoulos1,2, Zainab Abbas3, Britta Krieger4
1Department of Neurology, St Josef Hospital, Ruhr University, Gudrunstr. 56, 44791, Bochum, Germany. Theodoros.Ladopoulos@rub.de.
Background:
Conventional MRI measures, such as the number and volume of MS lesions, are histologically non-specific and cannot sufficiently explain clinical disability or brain atrophy in MS. Nevertheless, demyelinating plaques exhibit distinct histopathological features in relapsing and progressive multiple sclerosis (MS) subtypes. The aim of this study was to assess microstructural characteristics of MS lesions using quantitative MRI and explore their associations with grey matter (GM) atrophy and clinical disability.
Methods:
56 control subjects (CS), 121 patients with relapsing-remitting (RRMS), and 38 patients with primary progressive MS (PPMS) underwent 1.5 T MRI scans and clinical examinations. Lesion and brain segmentation based on T1-weighted and FLAIR images were performed using SAMSEG. The MDME sequence and SyMRI software were used to estimate relaxation rates and myelin volume fraction in MS lesions and normal-appearing white matter (NAWM). Associations between quantitative lesional and NAWM MRI parameters with GM atrophy and clinical disability were investigated.
Results:
Brain regional volumes and quantitative lesional and NAWM MRI parameters were significantly decreased in patients with PPMS compared to those with RRMS. Quantitative lesional MRI parameters demonstrated statistically significant associations with cortical and deep GM volumes as well as with disability scores in RRMS and especially in PPMS. In contrast to RRMS, lesion volume was not associated with either GM atrophy or clinical disability in the PPMS group.
Conclusions:
Quantitative lesional MRI measures, but not lesion load, were strongly associated with clinical disability and GM atrophy in PPMS patients, likely reflecting differences in lesion pathology between MS subtypes.
Insights
Quantitative MRI measures of multiple sclerosis (MS) lesions, not just lesion load, correlate with grey matter atrophy and disability in progressive MS. These findings highlight differences in lesion pathology between MS subtypes.
Area of Science:
- Neuroimaging
- Neurology
- Radiology
Background:
- Conventional MRI metrics like lesion count and volume in multiple sclerosis (MS) lack specificity and fail to fully explain clinical disability or brain atrophy.
- Demyelinating plaques show distinct histopathological features across relapsing and progressive MS subtypes.
- Quantitative MRI offers a more detailed assessment of MS lesions and their impact.
Purpose of the Study:
- To evaluate microstructural characteristics of MS lesions using quantitative MRI.
- To investigate the associations between these quantitative MRI parameters, grey matter (GM) atrophy, and clinical disability in different MS subtypes.
Main Methods:
- 56 control subjects, 121 relapsing-remitting MS (RRMS) patients, and 38 primary progressive MS (PPMS) patients underwent 1.5 T MRI scans and clinical assessments.
- Lesion and brain segmentation were performed using SAMSEG; relaxation rates and myelin volume fraction were estimated using MDME sequence and SyMRI software.
- Associations between quantitative MRI parameters (lesional and normal-appearing white matter) with GM atrophy and clinical disability were analyzed.
Main Results:
- PPMS patients exhibited significantly decreased brain regional volumes and quantitative lesional/NAWM MRI parameters compared to RRMS patients.
- Quantitative lesional MRI parameters were significantly associated with cortical/deep GM volumes and disability scores in both RRMS and PPMS, particularly in PPMS.
- Unlike in RRMS, lesion volume alone did not correlate with GM atrophy or clinical disability in the PPMS group.
Conclusions:
- Quantitative MRI measures of MS lesions, unlike simple lesion load, strongly correlate with clinical disability and GM atrophy in PPMS.
- These findings suggest distinct lesion pathologies contribute to disease progression in different MS subtypes.
- Quantitative MRI provides valuable insights into the relationship between lesion characteristics and clinical outcomes in MS.
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