Molecular basis of SLC19A1-mediated folate and cyclic dinucleotide transport

Qixiang Zhang1, Xuyuan Zhang2, Kexin Liu2,3

  • 1Key Laboratory of Molecular Medicine and Biotherapy, Aerospace Center Hospital, School of Life Science, Beijing Institute of Technology, Beijing, China.

Nature Communications
|April 2, 2025
PubMed

Insights

The solute carrier protein SLC19A1

Area of Science:

  • Structural Biology
  • Molecular Transport
  • Drug Discovery

Background:

  • Solute carrier protein SLC19A1 transports vital nutrients and drugs.
  • Understanding SLC19A1's conformational dynamics and substrate transport is crucial.
  • Previous studies focused on the inward-open state, leaving outward-open mechanisms unclear.

Purpose of the Study:

  • To elucidate the outward-open state structures of human SLC19A1 (hSLC19A1).
  • To reveal mechanisms of substrate recognition and conformational changes during transport.
  • To understand the binding of cyclic dinucleotides (CDNs) and antifolates.

Main Methods:

  • Antibody-facilitated conformation screening.
  • Cryo-electron microscopy (cryo-EM) of hSLC19A1.
  • Functional assays to validate structural findings.

Main Results:

  • Determined cryo-EM structures of hSLC19A1 in the outward-open state.
  • Identified specific binding pockets for folates, antifolates, and CDNs.
  • Observed monomeric binding of CDNs in the outward-open state, differing from inward-open states.

Conclusions:

  • Provided detailed insights into hSLC19A1 substrate recognition and transport mechanisms.
  • Revealed distinct binding modes for CDNs in different conformational states.
  • Established a framework for developing novel antifolate drugs and CDN-based therapies.

Related Concept Videos

The Significance of Membrane Transport01:44

The Significance of Membrane Transport

The transport of solutes across the cell membrane is essential for metabolic processes, like maintaining cell size and volume, generating the action potential, exchanging nutrients and gases, etc. Membrane transport can be either passive or active. It can be simple diffusion, facilitated, or mediated transport aided by transport proteins such as transporters and channels.
Transporters facilitate either an active or passive movement of solutes. They can allow a single-molecule transport down its...
20.7K
Glucose Transporters01:27

Glucose Transporters

Glucose transporters facilitate the transport of glucose across the cell membrane. In addition to glucose, some glucose transporters can also aid the movement of other hexoses such as fructose, mannose, and galactose.
Facilitated diffusion-glucose transporters (GLUTs) are encoded by the solute-linked carrier (SLC) family 2, subfamily A gene family, or SLC2A. The 14 GLUT protein members are distributed into three classes:
22.3K
Facilitated Diffusion01:16

Facilitated Diffusion

The plasma membrane, a critical structure in cellular biology, houses an array of transporters, or carrier proteins, interspersed within its lipid bilayer. These proteins play a crucial role in solute transport through facilitated diffusion, a form of passive diffusion that uses transporters to move the molecules across the membrane.
In this process, substrates such as organic compounds and ions interact with a transporter on one side, triggering conformational changes in proteins that enable...
262
Membrane Transporters01:31

Membrane Transporters

Transporters are essential membrane transport proteins with functions related to cell nutrition, homeostasis, communication, etc. Approximately 7% of all genes in the human genome code for transporters or transporter-related proteins.
Transporters are mainly composed of alpha-helices, built from bundles of ten or more helices traversing the plasma membrane. The solute-binding sites are located midway, where some of the helices are broken or distorted, making space for the binding site through...
10.1K
Carrier-Mediated Transport01:06

Carrier-Mediated Transport

Carrier-mediated transport is a pivotal process in drug absorption, particularly for lipid-insoluble drugs, and encompasses facilitated diffusion and active transport. Facilitated diffusion allows drugs to move along their concentration gradient without energy expenditure, while active transport utilizes ATP to drive drug movement against this gradient.
Active transport involves two types of membrane-spanning transporters: uptake and efflux. Uptake transporters are expressed in the small...
225
ABC Transporters: Importer01:27

ABC Transporters: Importer

ATP-binding cassette or ABC transporters are a class of ATP-driven pumps that hydrolyze ATP to move solutes across the membrane. They can be grouped into importers and exporters. While exporters are present in all domains of life, importers exist only in bacteria and some plants.
In bacteria, based on the number of transmembrane helices and the chemical nature of their substrates, the ABC importers can be divided into three types:
2.7K