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Updated: May 17, 2025

Paramyxoviruses for Tumor-targeted Immunomodulation: Design and Evaluation Ex Vivo
Published on: January 7, 2019
Design of immunogens to present a tumor-specific cryptic epitope
Huafeng Xu1,2, Timothy Palpant3,4, Qi Wang3
1D. E. Shaw Research, New York, NY, 10036, USA. huafeng@gmail.com.
Abstract:
In many cancers, the epidermal growth factor receptor (EGFR) gene is amplified, mutated, or both. The monoclonal antibody mAb806 binds selectively to cancer cells that overexpress EGFR or express the truncated mutant EGFRvIII, but not to normal cells. This suggests that a promising avenue for developing cancer vaccines may be to design immunogens that elicit mAb806-like antibodies. In this study, we designed immunogens that present the mAb806-binding epitope in the same conformation as in overexpressed or truncated EGFR. We first used molecular dynamics simulations to identify conformations of EGFR in which the residues of the mAb806-binding epitope are accessible. We then designed immunogens by substituting that epitope in place of a structurally similar loop in a different protein and generating mutants that could potentially stabilize the mAb806-binding conformation in this new context. Two mutants in which the epitope remained stable in subsequent simulations were chosen for evaluation in vitro. Binding kinetics experiments with these designed immunogens provided strong evidence that the epitope was successfully stabilized in the mAb806-binding conformation, suggesting that they could potentially form the basis of vaccines that elicit cancer-selective antibodies.
Insights
Researchers designed novel immunogens to create cancer vaccines. These immunogens mimic a specific binding site on cancer cells, potentially enabling the development of cancer-selective vaccines targeting the epidermal growth factor receptor (EGFR).
Area of Science:
- Oncology
- Immunology
- Structural Biology
Background:
- Epidermal growth factor receptor (EGFR) is frequently altered in various cancers.
- The monoclonal antibody mAb806 selectively targets cancer cells overexpressing EGFR or its mutant form, EGFRvIII.
- This selectivity suggests potential for developing cancer vaccines based on eliciting similar antibody responses.
Purpose of the Study:
- To design novel immunogens that present the mAb806-binding epitope in a conformation mimicking that found on cancer cells.
- To create potential vaccine candidates that elicit cancer-selective antibodies targeting EGFR.
Main Methods:
- Utilized molecular dynamics simulations to identify accessible conformations of the mAb806 epitope on EGFR.
- Engineered immunogens by substituting the epitope into a different protein scaffold.
- Generated mutants to stabilize the desired epitope conformation.
- Evaluated two stable mutants in vitro using binding kinetics experiments.
Main Results:
- Identified EGFR conformations with accessible mAb806-binding epitopes via simulations.
- Successfully designed and stabilized immunogens presenting the epitope in the target conformation.
- In vitro binding kinetics confirmed the stabilization of the mAb806-binding conformation in the designed immunogens.
Conclusions:
- Designed immunogens successfully stabilized the mAb806-binding epitope conformation.
- These immunogens show promise as a basis for developing cancer vaccines.
- The developed vaccines could elicit cancer-selective antibodies targeting EGFR.
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