Design of immunogens to present a tumor-specific cryptic epitope

Huafeng Xu1,2, Timothy Palpant3,4, Qi Wang3

  • 1D. E. Shaw Research, New York, NY, 10036, USA. huafeng@gmail.com.

Scientific Reports
|April 2, 2025
PubMed

Insights

Researchers designed novel immunogens to create cancer vaccines. These immunogens mimic a specific binding site on cancer cells, potentially enabling the development of cancer-selective vaccines targeting the epidermal growth factor receptor (EGFR).

Area of Science:

  • Oncology
  • Immunology
  • Structural Biology

Background:

  • Epidermal growth factor receptor (EGFR) is frequently altered in various cancers.
  • The monoclonal antibody mAb806 selectively targets cancer cells overexpressing EGFR or its mutant form, EGFRvIII.
  • This selectivity suggests potential for developing cancer vaccines based on eliciting similar antibody responses.

Purpose of the Study:

  • To design novel immunogens that present the mAb806-binding epitope in a conformation mimicking that found on cancer cells.
  • To create potential vaccine candidates that elicit cancer-selective antibodies targeting EGFR.

Main Methods:

  • Utilized molecular dynamics simulations to identify accessible conformations of the mAb806 epitope on EGFR.
  • Engineered immunogens by substituting the epitope into a different protein scaffold.
  • Generated mutants to stabilize the desired epitope conformation.
  • Evaluated two stable mutants in vitro using binding kinetics experiments.

Main Results:

  • Identified EGFR conformations with accessible mAb806-binding epitopes via simulations.
  • Successfully designed and stabilized immunogens presenting the epitope in the target conformation.
  • In vitro binding kinetics confirmed the stabilization of the mAb806-binding conformation in the designed immunogens.

Conclusions:

  • Designed immunogens successfully stabilized the mAb806-binding epitope conformation.
  • These immunogens show promise as a basis for developing cancer vaccines.
  • The developed vaccines could elicit cancer-selective antibodies targeting EGFR.

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