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Temporal and spatial feature extraction using graph neural networks for multi-point water quality prediction in river
Hang Wan1, Long Xiang2, Yanpeng Cai3
1Research Centre of Ecology & Environment for Coastal Area and Deep Sea, Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China.
Water Research
|April 4, 2025
Summary
A new Spatio-Temporal Feature Graph Neural Network (STF-GNN) improves water quality prediction by modeling pollutant spatial dynamics. This deep learning model enhances accuracy for dissolved oxygen and total nitrogen, outperforming existing methods.
Area of Science:
- Environmental Science
- Data Science
- Water Resource Management
Background:
- Traditional water quality prediction often overlooks spatial pollutant dynamics, focusing on individual sites.
- Deep learning excels at capturing nonlinear relationships but struggles with distributed monitoring data.
Purpose of the Study:
- To develop a novel deep learning model that integrates spatial and temporal features for accurate water quality prediction.
- To address the limitations of existing methods in capturing pollutant spatial dynamics across monitoring stations.
Main Methods:
- Proposed a Spatio-Temporal Feature Graph Neural Network (STF-GNN) integrating graph convolutional networks (GCN), gated recurrent units (GRU), and self-attention.
- Represented monitoring stations as graph nodes to model multi-scale spatiotemporal dependencies.
- Utilized multivariate time series data for training and validation.
Main Results:
- Achieved superior performance in dissolved oxygen (DO) and total nitrogen (TN) prediction with RMSE values of 0.233 (DO) and 0.033 (TN).
- Demonstrated robust generalization capabilities through cross-basin validation, with maximum relative errors below 0.639 (DO) and 0.606 (TN).
- Showcased strong anti-interference ability with 88% peak-valley synchronization at untrained stations.
Conclusions:
- The STF-GNN model effectively captures spatiotemporal dependencies for improved water quality prediction.
- Both spatial and temporal feature extraction are critical for enhancing predictive performance.
- The study provides a framework for spatially-aware water quality prediction, supporting environmental monitoring.

