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Published on: January 11, 2017
The Structure of the Drp1 Lattice on Membrane
Ruizhi Peng1, Kristy Rochon2, Anelise N Hutson2
1Institute of Molecular Biophysics, Florida State University, Tallahassee, FL, USA.
Abstract:
Mitochondrial health relies on the membrane fission mediated by dynamin-related protein 1 (Drp1). Previous structural studies of Drp1 on remodeled membranes were hampered by heterogeneity, leaving a critical gap in the understanding of the mitochondrial fission mechanisms. Here we present a cryo-electron microscopy structure of full-length human Drp1 decorated on membrane tubules. Using the reconstruction of average subtracted tubular regions (RASTR) technique, we report that Drp1 forms a locally ordered lattice along the tubule without global helical symmetry. The filaments in the lattice are similar to dynamin rungs with conserved stalk interactions. Adjacent filaments are connected by GTPase domain interactions in a novel stacked conformation. We identified two states of the Drp1 lattice among the heterogenous dataset representing conformational changes around hinge 1. Additionally, we observed contact between Drp1 and membrane that can be assigned to the variable domain sequence. Together these structures revealed a putative mechanism by which Drp1 constricts mitochondria membranes in a stepwise, "ratchet" manner.
Insights
Dynamin-related protein 1 (Drp1) structures reveal a novel mechanism for mitochondrial fission. Drp1 forms a lattice on membrane tubules, constricting them in a stepwise "ratchet" manner for essential mitochondrial health.
Area of Science:
- Cell Biology
- Structural Biology
- Biochemistry
Background:
- Mitochondrial health depends on membrane fission, primarily mediated by dynamin-related protein 1 (Drp1).
- Previous structural studies faced challenges due to sample heterogeneity, limiting understanding of Drp1's mechanism on membranes.
Purpose of the Study:
- To elucidate the structural basis of mitochondrial membrane fission by determining the cryo-electron microscopy structure of full-length human Drp1 on membrane tubules.
- To understand the conformational states and interactions of Drp1 during mitochondrial fission.
Main Methods:
- Cryo-electron microscopy (cryo-EM) of full-length human Drp1 bound to membrane tubules.
- Reconstruction of Average Subtracted Tubular Regions (RASTR) technique to analyze heterogeneous data.
- Identification and analysis of distinct Drp1 lattice conformations.
Main Results:
- Drp1 forms a locally ordered lattice on membrane tubules, lacking global helical symmetry.
- The Drp1 lattice exhibits conserved dynamin rung-like filament interactions and novel stacked GTPase domain conformations.
- Two distinct Drp1 lattice states were identified, indicating conformational changes around hinge 1.
- Observed Drp1-membrane contacts were linked to the variable domain sequence.
Conclusions:
- The study reveals a stepwise,
- ratchet-like
- mechanism for mitochondrial membrane constriction by Drp1.
- The findings provide critical structural insights into the heterogeneous process of mitochondrial fission.
- This work advances our understanding of the molecular machinery governing mitochondrial dynamics.
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