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Labeling DNA Probes03:31

Labeling DNA Probes

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DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
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High-resolution Fiber-optic Microendoscopy for in situ Cellular Imaging
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Optical Probes for Cellular Imaging of G-quadruplexes: Beyond Fluorescence Intensity Probes.

Jenna Robinson1, Aatikah Majid1, Marina K Kuimova1

  • 1Department of Chemistry, Imperial College London Molecular Sciences Research Hub, White City Campus, 82 Wood Lane, London, W12 0BZ, UK.

Angewandte Chemie (International Ed. in English)
|April 7, 2025
PubMed
Summary

New optical probes enable unbiased detection of G-quadruplex (G4) structures in cells. These probes overcome limitations of intensity-based methods, advancing the study of G4s in biological regulation.

Keywords:
Cellular ImagingFluorescence LifetimePhosphorescence LifetimeQuadruplex DNARatiometric Probes

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Area of Science:

  • Biochemistry
  • Molecular Biology
  • Genetics

Background:

  • G-quadruplex (G4) structures in DNA and RNA are increasingly recognized for their roles in biological regulation.
  • Research has progressed from in vitro studies to genome-wide detection within cellular environments.
  • Understanding G4s is crucial for fields like cancer research and gene expression regulation.

Purpose of the Study:

  • To review recent advancements in designing optical probes for G-quadruplex (G4) detection.
  • To highlight probes that are independent of photoluminescent intensity for unbiased cellular analysis.
  • To discuss the potential of these probes in advancing G4 biology research.

Main Methods:

  • Review of intensity-independent optical probe designs for G-quadruplexes.
  • Discussion of probes utilizing fluorescence or phosphorescence lifetime.
  • Exploration of spectral ratiometric and single-molecule detection probes.

Main Results:

  • Intensity-independent probes offer improved, unbiased G4 detection in cellular experiments.
  • Lifetime-based, ratiometric, and single-molecule probes mitigate issues with probe uptake and concentration.
  • These advanced probes facilitate more accurate G4 analysis in biological contexts.

Conclusions:

  • Novel optical probe designs are essential for overcoming limitations in G4 detection.
  • Intensity-independent modalities significantly enhance the reliability of cellular G4 studies.
  • Further development is needed to fully exploit these probes for robust G4 biology research.