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Updated: May 23, 2025

Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
Broad versus limited gene panels to guide treatment in patients with advanced solid tumors: a randomized controlled
Olivier Trédan1,2, Damien Pouessel3, Nicolas Penel4
1Centre Léon Bérard, Lyon, France. olivier.tredan@lyon.unicancer.fr.
Abstract:
Large genomic programs have contributed to improving drug development in cancer. To assess the potential benefit of using larger gene panels to guide molecular-based treatments, we conducted a multicenter randomized trial in patients with advanced and/or metastatic solid cancer. Molecular alterations were determined using either a panel of 324 cancer-related genes (Foundation OneCDX (F1CDX)) or a limited panel of 87 single-nucleotide/indel genes and genome-wide copy number variations (CTL) and reviewed by a molecular tumor board to identify molecular-based recommended therapies (MBRTs). Using paired data from both panels for each patient, the primary endpoint was the proportion of patients with an MBRT identified. Main secondary endpoints included the number of patients with at least one actionable alteration leading to MBRT identification, the number of patients with and without MBRTs initiated, progression-free survival, best overall response, duration of response and safety. Among the 741 patients screened, 45.7% had quality-checked tumor samples. MBRTs were identified with F1CDX in 175 (51.6%) patients and with CTL in 125 (36.9%) patients, translating to a significant increase of 14.8 percentage points (P < 0.001) with the more comprehensive gene panel versus the more limited panel, meeting the primary endpoint. However, no differences in clinical outcomes were observed in these patients with advanced and/or metastatic cancer in need of treatment beyond standard genomic alterations. These findings illustrate the potential for larger gene panels to increase the number of molecularly matched therapies. Larger studies are needed to assess the clinical benefit of expanded MBRTs. ClinicalTrials.gov registration: NCT03163732 .
Insights
Larger gene panels significantly increase the identification of molecular-based recommended therapies (MBRTs) in advanced cancer patients. However, this study found no improvement in clinical outcomes, highlighting the need for further research into the benefits of expanded MBRTs.
Area of Science:
- Oncology
- Genomics
- Clinical Trials
Background:
- Genomic profiling is crucial for advancing targeted cancer therapies.
- The utility of larger gene panels for guiding treatment decisions requires further investigation.
Purpose of the Study:
- To compare the efficacy of a comprehensive gene panel (Foundation OneCDX) versus a limited panel (CTL) in identifying molecular-based recommended therapies (MBRTs) for advanced cancer patients.
- To assess the impact of MBRTs identified by different panel sizes on clinical outcomes.
Main Methods:
- A multicenter randomized trial involving patients with advanced/metastatic solid cancer.
- Molecular alterations were assessed using either a 324-gene panel (F1CDX) or an 87-gene panel (CTL).
- Molecular tumor boards reviewed findings to recommend therapies (MBRTs).
Main Results:
- A larger proportion of patients received MBRTs with the comprehensive F1CDX panel (51.6%) compared to the limited CTL panel (36.9%), a statistically significant difference (14.8 percentage points, P < 0.001).
- Despite increased MBRT identification, no significant differences in progression-free survival, overall response, or safety were observed between the groups.
- Quality-checked tumor samples were available for 45.7% of the 741 patients screened.
Conclusions:
- Comprehensive gene panels significantly increase the identification of molecular-based recommended therapies in advanced cancer.
- Expanded molecular profiling does not currently translate to improved clinical outcomes in this patient population.
- Further large-scale studies are necessary to determine the clinical benefit of expanded MBRTs in cancer treatment.
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