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Understanding Enzalutamide-Resistance Based on a Functional Single-Cell Approach.

Changhui Xue1, Hyun-Kyung Ko1, Kasen Shi1

  • 1Division of Oncological Sciences, Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, USA.

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|April 11, 2025
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Summary

A small subpopulation of prostate cancer cells with low androgen receptor (AR) expression drives resistance to enzalutamide therapy. These AR-low cells are selected and expanded by treatment, leading to castration-resistant prostate cancer (CRPC).

Keywords:
androgen receptorcastration resistanceenzalutamideprostate cancersingle‐cell RNA‐Seq

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Area of Science:

  • Oncology
  • Molecular Biology
  • Genetics

Background:

  • Metastatic prostate cancer (PCa) treatment relies on anti-androgen or castration therapies.
  • Androgen-dependent PCa (ADPC) often develops resistance, progressing to incurable castration-resistant PCa (CRPC).
  • Mechanisms of CRPC emergence from ADPC remain largely unclear.

Purpose of the Study:

  • To investigate the transcriptional heterogeneity of ADPC cells.
  • To understand the response of ADPC cells to enzalutamide treatment.
  • To identify mechanisms of therapy resistance in prostate cancer.

Main Methods:

  • Single-cell RNA-sequencing (scRNA-Seq) of LNCaP cells.
  • Isolation of androgen receptor low/negative (ARlow/-) cell subpopulations.
  • In vitro and in vivo functional assays using xenograft models.
  • Single-nucleus RNA-Seq on xenografts.

Main Results:

  • A small subpopulation (~10%) of LNCaP cells expressed low or no androgen receptor (ARlow/-).
  • ARlow/- cells exhibited distinct transcriptional profiles and pathways associated with CRPC.
  • ARlow/- cells demonstrated enzalutamide resistance in vitro and in vivo.
  • Enzalutamide treatment selected for ARlow/- cells and de-selected AR-positive (AR+) cells in vivo.

Conclusions:

  • A clonal selection and expansion model explains enzalutamide resistance in PCa.
  • Pre-existing ARlow/- subpopulations are selected and expanded by anti-androgen therapy.
  • Targeting ARlow/- cells may be a strategy to overcome treatment resistance.