Suppression of TGF-β/SMAD signaling by an inner nuclear membrane phosphatase complex

Zhe Ji1, Wing-Yan Skyla Siu1, Maria Emilia Dueñas2,3

  • 1Sir William Dunn School of Pathology, University of Oxford, Oxford, UK.

Nature Communications
|April 11, 2025
PubMed

Insights

Transforming growth factor-beta (TGF-β) signaling is inactivated by dephosphorylation of receptor-regulated SMADs (R-SMADs) within the nucleus. A MAN1-CTDNEP1-NEP1R1 complex mediates this crucial R-SMAD inactivation.

Area of Science:

  • Cell biology
  • Molecular biology
  • Signal transduction

Background:

  • Transforming growth factor-beta (TGF-β) superfamily cytokines regulate cell fate through receptor-regulated SMAD (R-SMAD) transcription factors.
  • R-SMAD activation involves cytosolic phosphorylation, leading to nuclear accumulation and downstream signaling.
  • Mechanisms of R-SMAD inactivation in the nucleus are critical for proper signal termination.

Purpose of the Study:

  • To elucidate the molecular mechanisms underlying R-SMAD inactivation by dephosphorylation within the cell nucleus.
  • To identify the specific phosphatase responsible for R-SMAD dephosphorylation.
  • To investigate the role of the scaffold protein MAN1 in this inactivation process.

Main Methods:

  • Structural prediction and domain mapping of protein interactions.
  • Site-directed mutagenesis to assess protein function.
  • Analysis of R-SMAD localization and signaling activity in response to complex disruption.

Main Results:

  • R-SMAD dephosphorylation is mediated by an inner nuclear membrane complex involving MAN1 and the CTDNEP1-NEP1R1 phosphatase.
  • MAN1 acts as a scaffold, binding independently to both CTDNEP1-NEP1R1 and R-SMADs to facilitate R-SMAD inactivation.
  • Disruption of the MAN1-CTDNEP1-NEP1R1 complex leads to aberrant nuclear R-SMAD accumulation and signaling, even without TGF-β stimulation.
  • Disease-associated MAN1 mutations impair this inactivation process.

Conclusions:

  • CTDNEP1-NEP1R1 is identified as the key R-SMAD phosphatase.
  • The MAN1-CTDNEP1-NEP1R1 complex provides the mechanistic basis for TGF-β signaling inactivation.
  • Dysfunction of this complex, particularly due to MAN1 mutations, contributes to aberrant cellular signaling and disease.

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