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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Additional genetic variants in cardiomyopathy patients with the pathogenic PLN p.(Arg14del) founder variant
E van Drie1, J D H Jongbloed2, E Hoorntje2
1Department of Genetics, University Medical Center Utrecht, Heidelberglaan 100, 3584 CX Utrecht, the Netherlands; Netherlands Heart Institute, Moreelsepark 1, 3511 EP Utrecht, the Netherlands; Member of the European Reference Network for Rare, Low Prevalence and Complex Diseases of the Heart: ERN GUARD-Heart' (ERN GUARDHEART; http://guardheart.ern-net.eu), the Netherlands.
Insights
Genetic variants in PLN p.(Arg14del) patients were analyzed. Six percent of patients had additional pathogenic variants, showing a trend towards earlier cardiac events.
Area of Science:
- Cardiovascular Genetics
- Molecular Cardiology
- Genetic Epidemiology
Background:
- PLN p.(Arg14del) is a known genetic variant associated with cardiac conditions.
- The clinical significance of additional rare genetic variants in these patients is not fully understood.
- Understanding these variants can improve risk stratification and patient management.
Purpose of the Study:
- To determine the prevalence of additional rare genetic variants in cardiomyopathy- and channelopathy-related genes in PLN p.(Arg14del) patients.
- To evaluate the clinical consequences of these additional variants, focusing on malignant ventricular arrhythmias (MVA) and severe heart failure (HF).
Main Methods:
- Collected data on additional rare genetic variants in 160 PLN p.(Arg14del) index patients.
- Classified variants as variants of uncertain significance (VUS) or (likely) pathogenic ((L)P).
- Compared the occurrence and onset of MVA or severe HF events in patients with and without additional (L)P variants.
Main Results:
- An additional (L)P variant was identified in 6% of PLN index patients.
- Patients with additional (L)P variants showed a non-significant trend towards earlier MVA or severe HF events.
- Cascade testing in relatives revealed additional pathogenic variants in 2 out of 8 individuals with major cardiac events before age 45.
Conclusions:
- Additional (L)P variants are more prevalent in PLN p.(Arg14del) patients than in control populations.
- These variants may be associated with an earlier onset of MVA or HF-related symptoms.
- Further research is warranted to fully elucidate the impact of these genetic findings.
Aims:
To evaluate the prevalence and clinical consequences of additional rare genetic variants in cardiomyopathy- and/or channelopathy-related genes in PLN p.(Arg14del) patients.
Methods:
In PLN p.(Arg14del) index patients (n = 160), additional rare genetic variants in cardiomyopathy- or channelopathy-related genes were collected. These variants were (re)classified as either variants of uncertain significance (VUS) or (likely) pathogenic ((L)P). VUS were further subcategorized in low, mid or high suspicion VUS. Cascade genetic testing results were studied in families with an additional (L)P variant. The occurrence and onset of malignant ventricular arrhythmias (MVA) or severe heart failure (HF)-related events in PLN index patients with and without additional (L)P variants were compared. In addition, extended genetic testing was performed in PLN relatives (n = 8) with major cardiac events <45 year.
Results:
In 6 % (6/106) of PLN index patients in whom targeted gene panel analysis was performed, an additional (L)P variant was identified. These patients showed a non-significant trend towards earlier onset of MVA or a severe HF-related event versus those without an additional variant. Incorporating VUS subclassification did not alter either of these trends. Two out of 8 PLN relatives with a major cardiac event <45 year had an additional P variant.
Conclusion:
Additional (L)P variants in established cardiomyopathy- or channelopathy-related genes were found in 6 % of PLN p.(Arg14del) index patients, which is higher than in control populations. These patients showed a trend towards earlier onset of MVA or HF-related symptoms.
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