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Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
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Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
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Cells are sometimes infected by more than one virus at once. When two viruses disassemble to expose their genomes for replication in the same cell, similar regions of their genomes can pair together and exchange sequences in a process called recombination. Alternatively, viruses with segmented genomes can swap segments in a process called reassortment.
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Nuclear reprogramming is the process of switching gene expression of one cell type to that of another cell type, usually from a differentiated cell state to an undifferentiated cell state. Differentiation occurs during processes such as development and morphogenesis, tissue regeneration, and malignancy. Cells can also be artificially induced to reprogram their gene expression by techniques such as nuclear transfer, induced pluripotency, and cell fusion. Such techniques have many applications in...
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In-situ Hybridization02:31

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In situ hybridization (ISH) is a technique used to detect and localize specific DNA or RNA molecules in cells, tissue, or tissue sections using a labeled probe. The technique was first used in 1969 for the investigation of nucleic acids. It is currently an essential tool in scientific research and clinical settings, especially for diagnostic purposes.
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Related Experiment Video

Updated: May 13, 2025

Improving Student Outcomes with an Adaptable Molecular Cloning Course-Based Undergraduate Research Experience
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Improving Student Outcomes with an Adaptable Molecular Cloning Course-Based Undergraduate Research Experience

Published on: November 15, 2024

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Combining flipped-classroom and spaced-repetition learning in a master-level bioinformatics course.

Gabriele Pozzati1,2, Samuel Coulbourn Flores1,2

  • 1Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.

Plos Computational Biology
|April 15, 2025
PubMed
Summary

This study improved introductory bioinformatics education using a flipped, spaced-repetition course with frequent assessments. The approach enhanced learning outcomes and student satisfaction over seven years.

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Area of Science:

  • Bioinformatics Education
  • Pedagogical Innovation

Background:

  • Introductory bioinformatics courses present unique teaching challenges due to diverse student backgrounds (biology vs. computer science).
  • Bridging the knowledge gap between biological and computational concepts is crucial for effective bioinformatics training.

Purpose of the Study:

  • To evaluate the effectiveness of a flipped, spaced-repetition course model for introductory bioinformatics.
  • To assess the impact of frequent examinations on student learning and engagement.

Main Methods:

  • Implementation of a flipped classroom model with spaced repetition of topics across multiple days.
  • Integration of frequent examinations to reinforce learning and structure laboratory practicals.
  • Analysis of student grades, pass rates, satisfaction, and qualitative feedback over seven years.

Main Results:

  • The pedagogical approach demonstrated consistent progress in student performance and satisfaction over a seven-year period.
  • The flipped, spaced-repetition model proved adaptable to disruptions, including the COVID-19 pandemic and changes in teaching staff.
  • Frequent examinations were found to be synergistic with the flipped classroom, promoting pre-class engagement.

Conclusions:

  • A flipped, spaced-repetition course with frequent assessments is an effective strategy for teaching introductory bioinformatics.
  • This pedagogical model offers flexibility and resilience in diverse educational settings.
  • An open online version of the course is available to support broader access to bioinformatics education.