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Updated: May 11, 2025

Guided Protocol for Fecal Microbial Characterization by 16S rRNA-Amplicon Sequencing
Published on: March 19, 2018
Identification of intestinal microbial population structure of Penaeus vannamei supplemented with chitosan
Chunpeng Fu1, Xiaopeng Fu2, Zongzhen Li1
1Shandong Peninsula Engineering Research Center of Comprehensive Brine Utilization, Weifang University of Science and Technology, Shouguang, China.
Abstract:
The intestinal microbiota of Penaeus vannamei is critical for its health and disease resistance, but imbalances can increase the risk of infections, especially by pathogenic Vibrio species. This study used the 2bRAD-M method to analyze the effects of dietary chitosan oligosaccharide (COS) supplementation on the gut microbiota of P. vannamei. Shrimp were fed diets with COS at 5‰ and 10‰ levels. Results showed that as COS concentration increased, beneficial microbial taxa (e.g., Bacteroidetes, Actinobacteria, and Campylobacter) significantly increased, while harmful bacteria decreased. For example, Vibrio parahemolyticus abundance dropped from 0.084 in controls to 0.033 in the 5‰ group, and Vibrio rotiforianus decreased from 0.216 in controls to 0.121 and 0.021 in the 5‰ and 10‰ groups, respectively. Photobacterium damselae also declined from 0.244 in controls to 0.049 and 0.094 in the 5‰ and 10‰ groups. These findings indicate that COS supplementation can enhance beneficial microbes and reduce harmful bacteria in P. vannamei intestines. This study highlights COS as a sustainable dietary intervention to improve shrimp health and reduce antibiotic use in aquaculture.
Importance:
This study demonstrates that dietary chitosan oligosaccharide (COS) supplementation can effectively modulate the intestinal microbiota of Penaeus vannamei. At 5‰ and 10‰ levels, COS increased beneficial bacteria (e.g., Bacteroidetes and Actinobacteria) while reducing harmful pathogens like Vibrio parahaemolyticus and Vibrio rotiferianus. This shift enhances nutrient absorption, immune function, and disease resistance in shrimp. COS thus offers a sustainable alternative to antibiotics in aquaculture, promoting healthy growth and reducing environmental impact.
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