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NEMF-mediated CAT tailing facilitates translocation-associated quality control.

Amanda Ennis1, Lihui Wang1, Yue Xu1

  • 1Laboratory of Molecular Biology, National Institute of Diabetes, Digestive, and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA.

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Cells degrade stalled proteins using distinct pathways. Nonstop mRNA-translated proteins are targeted for degradation via a novel ER-associated degradation (ERAD) pathway involving Golgi retrieval and NEMF-mediated tailing.

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Area of Science:

  • Cell Biology
  • Molecular Biology
  • Protein Biogenesis

Background:

  • Ribosome stalling during co-translational translocation at the endoplasmic reticulum (ER) can lead to translocon clogging.
  • Impaired ER protein biogenesis results from translocon clogging.
  • Translocation-associated quality control (TAQC) is a poorly understood process that resolves translocon clogging in mammalian cells.

Purpose of the Study:

  • To elucidate the molecular mechanisms underlying the translocation-associated quality control (TAQC) process.
  • To differentiate the degradation pathways for various TAQC substrates.
  • To identify key factors involved in the quality control of nascent protein chains.

Main Methods:

  • Genome-wide CRISPR screen
  • Live-cell imaging
  • Analysis of protein degradation pathways (lysosomal, proteasomal, ERAD)

Main Results:

  • TAQC substrates from mRNAs with ribosome-stalling poly(A) sequences are degraded by lysosomes and the proteasome.
  • Defective nascent chains from nonstop (NS) mRNAs are degraded via an unconventional ER-associated protein degradation (ERAD) pathway.
  • This ERAD pathway involves ER-to-Golgi trafficking, KDEL-mediated retrieval at the Golgi, and the tRNA-binding factor NEMF.
  • NEMF appends an aggregation-prone carboxyl tail to stalled NS nascent chains, termed CAT tailing.

Conclusions:

  • NEMF-mediated CAT tailing targets a subset of TAQC substrates for ERAD through Golgi retrieval.
  • This novel pathway safeguards ER homeostasis by clearing defective nascent chains.
  • The study reveals distinct degradation routes for TAQC substrates, highlighting the complexity of protein quality control in the ER.