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Ensemble learning with explainable AI for improved heart disease prediction based on multiple datasets.
Shahid Mohammad Ganie1, Pijush Kanti Dutta Pramanik2, Zhongming Zhao3
1AI Research Centre, Department of Analytics, Woxsen University, Hyderabad, Telangana, 502345, India.
Scientific Reports
|April 22, 2025
Summary
Ensemble machine learning models, particularly stacking, significantly improve early heart disease prediction accuracy. These methods offer a valuable tool for clinical decision-making by enhancing diagnostic capabilities.
Area of Science:
- Cardiology
- Machine Learning
- Artificial Intelligence
Background:
- Heart disease is a leading global cause of mortality.
- Early detection and accurate diagnosis are critical for effective patient management.
- Machine learning offers potential for improving cardiac condition diagnosis.
Purpose of the Study:
- To enhance heart disease prediction accuracy using ensemble machine learning techniques.
- To compare the performance of stacking and voting ensemble methods against individual models.
- To provide transparency in model predictions using explainable AI (XAI).
Main Methods:
- Trained fifteen base machine learning models on two heart disease datasets.
- Developed ensemble models using stacking (with a meta-model) and voting (majority vote) with six selected base models.
- Conducted statistical validation using Friedman aligned ranks test and Holm post-hoc analysis; incorporated SHAP for XAI.
Main Results:
- Ensemble models, especially stacking, demonstrated superior performance over individual base models.
- Achieved higher accuracy and improved predictive outcomes in heart disease classification.
- SHAP analysis provided insights into feature influence on prediction, enhancing model interpretability.
Conclusions:
- Stacking and voting ensemble methods significantly enhance heart disease prediction performance.
- These ensemble approaches represent a valuable tool for clinical decision-making in cardiology.
- Explainable AI integration increases trust and understanding of machine learning-based diagnostic tools.

