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Ensemble learning with explainable AI for improved heart disease prediction based on multiple datasets.

Shahid Mohammad Ganie1, Pijush Kanti Dutta Pramanik2, Zhongming Zhao3

  • 1AI Research Centre, Department of Analytics, Woxsen University, Hyderabad, Telangana, 502345, India.

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|April 22, 2025
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Summary

Ensemble machine learning models, particularly stacking, significantly improve early heart disease prediction accuracy. These methods offer a valuable tool for clinical decision-making by enhancing diagnostic capabilities.

Keywords:
Ensemble learningExplainable AIHeart disease predictionSHAPStackingVoting

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Area of Science:

  • Cardiology
  • Machine Learning
  • Artificial Intelligence

Background:

  • Heart disease is a leading global cause of mortality.
  • Early detection and accurate diagnosis are critical for effective patient management.
  • Machine learning offers potential for improving cardiac condition diagnosis.

Purpose of the Study:

  • To enhance heart disease prediction accuracy using ensemble machine learning techniques.
  • To compare the performance of stacking and voting ensemble methods against individual models.
  • To provide transparency in model predictions using explainable AI (XAI).

Main Methods:

  • Trained fifteen base machine learning models on two heart disease datasets.
  • Developed ensemble models using stacking (with a meta-model) and voting (majority vote) with six selected base models.
  • Conducted statistical validation using Friedman aligned ranks test and Holm post-hoc analysis; incorporated SHAP for XAI.

Main Results:

  • Ensemble models, especially stacking, demonstrated superior performance over individual base models.
  • Achieved higher accuracy and improved predictive outcomes in heart disease classification.
  • SHAP analysis provided insights into feature influence on prediction, enhancing model interpretability.

Conclusions:

  • Stacking and voting ensemble methods significantly enhance heart disease prediction performance.
  • These ensemble approaches represent a valuable tool for clinical decision-making in cardiology.
  • Explainable AI integration increases trust and understanding of machine learning-based diagnostic tools.