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Comparative transcriptome analysis of bull X- and Y-spermatozoa
Sofi Imran Ul Umar1,2, Sushil Prasad2, Soumen Naskar3
1ICAR-Indian Institute of Agricultural Biotechnology, Garhkhatanga, Ranchi, 834003, India.
Scientific Reports
|April 26, 2025
Summary
Researchers analyzed gene expression in X- and Y-sperm of cattle to find differences. This study provides a crucial dataset for developing new sex-sorting technologies and improving fertility in dairy cows.
Area of Science:
- Reproductive Biology
- Genomics
- Dairy Science
Background:
- Sex-sorted bovine semen is vital for dairy production but current methods are costly and inefficient.
- A lack of comprehensive omics data hinders understanding of sperm sex differences and biomarker discovery.
- Developing alternative sex-sorting technologies is essential for global milk production.
Purpose of the Study:
- To perform RNA-Seq analysis on unsorted, X-, and Y-sperm in Bos indicus cattle.
- To identify differentially expressed genes between X- and Y-sperm.
- To generate a foundational transcriptome dataset for biomarker discovery in bovine semen sex-sorting.
Main Methods:
- RNA-Sequencing (RNA-Seq) was performed on unsorted, X-sperm, and Y-sperm from Bos indicus.
- Differential gene expression analysis was conducted to identify significant gene expression changes.
- Quantitative PCR (qPCR) was used to validate the expression of key differentially expressed genes.
Main Results:
- Significant upregulation of 47 genes and downregulation of 20 genes were observed in Y-sperm compared to X-sperm (adjusted p < 0.05).
- 16% of transcripts were unique to X-sperm, and 20.7% were unique to Y-sperm.
- Validation using qPCR confirmed significant differential expression in 21 out of 22 tested genes between Y- and X-sperm.
Conclusions:
- This study presents the first transcriptome dataset for bovine X- and Y-sperm.
- The identified differentially expressed genes can serve as potential biomarkers for sex-sorting technologies.
- The findings will contribute to the development of improved sex-sorting methods and enhanced fertility outcomes in cattle.

