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Updated: Jul 13, 2026

Deep Learning-Based Segmentation of Cryo-Electron Tomograms
Published on: November 11, 2022
Visual analysis of deep learning semantic segmentation applied to petrographic thin sections
Joaquin Morales1,2, Camila Saldivia1,2, Rodolfo Lobo3
1Facultad de Ciencias, Instituto de Ciencias de la Tierra, Universidad Austral de Chile, 5090000, Valdivia, Chile.
Abstract:
Object detection methods based on deep learning have significantly reduced time-consuming tasks. Semantic segmentation has shown remarkable progress in the study of rocks, especially when applied to petrographic thin sections. Despite the development of various models for specific applications in this field with promising results, their widespread adoption remains limited. This hesitation is largely due to a lack of user confidence stemming from the absence of explainability in the outcomes provided by these models. This study explores the explainability of the state-of-the-art YOLOv11 model in detecting andalusite, biotite, and grains with oolitic textures. We trained three models using plane-polarized-light thin-section microphotographs of the selected targets. Subsequently, we applied color and singular value perturbations to the annotated images using color masks and analyzed the model's inference through connected region heatmaps. Our findings suggest that the trained models prioritize low-frequency attributes like shape, predominant colors, and contrast over the studied targets' characteristic tones. These insights contribute to the practical application of deep learning for detecting and segmenting grains and minerals in thin sections.
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