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Updated: Jul 2, 2026

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A Comprehensive Protocol for Manual Segmentation of the Medial Temporal Lobe Structures
Published on: July 2, 2014
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Automated segmentation for cortical thickness of the medial perirhinal cortex
Nicolas A Henzen1,2, Ahmed Abdulkadir3,4,5, Julia Reinhardt6,7,8
1University Department of Geriatric Medicine FELIX PLATTER, Burgfelderstrasse 101, 4055, Basel, Switzerland. Nicolas.Henzen@felixplatter.ch.
Scientific Reports
|April 28, 2025
Summary
This study developed an automated tool to measure brain structure changes in Alzheimer's disease (AD). The tool accurately detects atrophy in key regions like the medial perirhinal cortex, aiding early AD diagnosis.
Area of Science:
- Neuroscience
- Medical Imaging
- Artificial Intelligence
Background:
- Alzheimer's disease (AD) involves progressive neurofibrillary tangle (NFT) spread, starting in the medial perirhinal cortex (mPRC).
- The mPRC is a potential early diagnostic marker for AD due to its link with neuronal loss.
- Automated tools for measuring mPRC cortical thickness are limited.
Purpose of the Study:
- To develop and validate an automated tool for measuring cortical thickness in AD-vulnerable brain regions.
- To assess the utility of automated measurements for detecting structural changes in Alzheimer's dementia and mild cognitive impairment.
Main Methods:
- Utilized the nnU-Net framework to train models on structural MRI data from 126 adults.
- Applied trained models to an independent dataset of 103 adults (Alzheimer's dementia, amnestic mild cognitive impairment (aMCI), and healthy controls).
- Compared automated cortical thickness measurements with manual segmentations and analyzed group differences.
Main Results:
- Achieved high agreement between automated and manual cortical thickness measurements.
- Identified significant mPRC, entorhinal cortex (ERC), and lateral perirhinal cortex (lPRC) atrophy in Alzheimer's dementia compared to controls.
- Found significant ERC atrophy in the aMCI group compared to healthy controls.
Conclusions:
- The developed automated segmentation tool demonstrates high accuracy and agreement with manual measurements.
- The tool is effective in detecting regional brain atrophy associated with Alzheimer's disease and aMCI.
- This automated approach can significantly advance Alzheimer's disease research and early diagnosis.
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