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Updated: May 20, 2025

Author Spotlight: Understanding and Detecting Environmental Antimicrobial Resistance by Combining Culture-Based Techniques and Genomics
Published on: July 19, 2024
Antimicrobial effects, and selection for AMR by non-antibiotic drugs in a wastewater bacterial community
April Hayes1, Lihong Zhang1, Edward Feil2
1Faculty of Health and Life Sciences, University of Exeter, Penryn, UK.
Abstract:
Antimicrobial resistance (AMR) is a major threat to human, animal, and crop health. AMR can be directly selected for by antibiotics, and indirectly co-selected for by biocides and metals, at environmentally relevant concentrations. Some evidence suggests that non-antibiotic drugs (NADs) can co-select for AMR, but previous work focused on exposing single model bacterial species to predominately high concentrations of NADs. There is a significant knowledge gap in understanding a range of NAD concentrations, (including lower µg/L concentrations found in the environment) on mixed bacterial communities containing a diverse mobile resistome. Here, we determined the antimicrobial effect and selective potential of diclofenac, metformin, and 17-β-estradiol, NADs that are commonly found environmental pollutants, in a complex bacterial community using a combination of culture based, metagenome, and metratranscriptome approaches. We found that diclofenac, metformin, and 17-β-estradiol at 50 µg/L, 26 µg/L, and 24 µg/L respectively, significantly reduced growth of a bacterial community although only 17-β-estradiol selected for an AMR marker using qPCR (from 7 µg/L to 5400 µg/L). Whole metagenome sequencing indicated that there was no clear selection by NADs for antibiotic resistance genes, or effects on community composition. Additionally, increases in relative abundance of some specific metal resistance genes (such as arsB) were observed after exposure to diclofenac, metformin, and 17-β-estradiol. These results indicate that environmentally relevant concentrations of NADs are likely to affect community growth, function, and potentially selection for specific metal resistance genes.
Insights
Non-antibiotic drugs (NADs) like diclofenac and metformin can impact bacterial communities and co-select for metal resistance genes, even at low environmental concentrations. This study highlights potential risks to microbial ecosystems from common pollutants.
Area of Science:
- Environmental microbiology
- Antimicrobial resistance
- Ecotoxicology
Background:
- Antimicrobial resistance (AMR) poses a global health threat, exacerbated by co-selection from various environmental contaminants.
- Non-antibiotic drugs (NADs) are emerging as potential co-selectors of AMR, but their effects on complex microbial communities at environmentally relevant concentrations are poorly understood.
Purpose of the Study:
- To investigate the antimicrobial effects and AMR co-selection potential of common environmental NADs (diclofenac, metformin, 17-β-estradiol) on a complex bacterial community.
- To assess these effects across a range of concentrations, including those found in the environment.
Main Methods:
- Utilized a combination of culture-based methods, whole metagenome sequencing, and metatranscriptomics.
- Exposed a mixed bacterial community to varying concentrations of diclofenac, metformin, and 17-β-estradiol.
- Quantified antimicrobial effects and analyzed shifts in the resistome and community composition.
Main Results:
- Diclofenac, metformin, and 17-β-estradiol significantly inhibited bacterial community growth at concentrations of 50 µg/L, 26 µg/L, and 24 µg/L, respectively.
- Only 17-β-estradiol showed evidence of selecting for an antimicrobial resistance marker.
- No clear selection for antibiotic resistance genes was observed via metagenomics, but increases in metal resistance genes (e.g., arsB) were noted after NAD exposure.
Conclusions:
- Environmentally relevant concentrations of NADs can impact bacterial community growth and function.
- NADs may influence the selection of specific metal resistance genes within microbial communities.
- Further research is needed to fully understand the complex interactions between NADs, microbial communities, and the spread of antimicrobial resistance.
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