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Updated: May 9, 2025

In Vitro Biochemical Assays using Biotin Labels to Study Protein-Nucleic Acid Interactions
Published on: July 17, 2019
EXO1 promotes the meiotic MLH1-MLH3 endonuclease through conserved interactions with MLH1, MSH4 and DNA
Megha Roy1, Aurore Sanchez2,3, Raphael Guerois4
1Institute for Research in Biomedicine, Università della Svizzera italiana (USI), Faculty of Biomedical Sciences, Bellinzona, Switzerland.
Abstract:
The endonuclease activity of MLH1-MLH3 (MutLγ) is stimulated by MSH4-MSH5 (MutSγ), EXO1, and RFC-PCNA to resolve meiotic recombination intermediates such as double Holliday junctions (HJs) into crossovers. We show that EXO1 directly interacts with MLH1 via the EXO1 MIP motif and a patch centered around EXO1-I403. Disrupting this interaction unexpectedly only partially inhibited MutLγ. We found that EXO1 also directly interacts with MutSγ. Crucially, a single point mutation in EXO1 (W371E) impairs its interaction with MSH4 and completely abolished its ability to activate DNA nicking by MutLγ without affecting its intrinsic nuclease function. Finally, disrupting magnesium coordinating residues in the nuclease domain of EXO1 has no impact on MutSγ-MutLγ activity, while the integrity of EXO1 residues mediating interactions with double-stranded DNA (dsDNA) is important. Our findings suggest EXO1 is an integral structural component of the meiotic resolvase complex, supported by conserved interactions with MutSγ, MutLγ and dsDNA. We propose that EXO1 helps tether MutSγ-MutLγ to dsDNA downstream of HJ recognition to promote DNA cleavage.
Insights
EXO1 is crucial for resolving meiotic recombination intermediates. Its interaction with MutSγ and MutLγ complexes, rather than its nuclease function, is key for activating DNA cleavage during crossover formation.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Meiotic recombination generates genetic diversity.
- Resolving Holliday junctions (HJs) into crossovers is essential for accurate chromosome segregation.
- The MutSγ (MSH4-MSH5) and MutLγ (MLH1-MLH3) complexes, along with EXO1, are implicated in HJ resolution.
Purpose of the Study:
- To elucidate the role of EXO1 in the meiotic resolvase complex.
- To investigate the interactions between EXO1, MutSγ, and MutLγ.
- To determine how EXO1's nuclease activity and interaction domains contribute to Holliday junction resolution.
Main Methods:
- Co-immunoprecipitation assays to study protein interactions.
- Site-directed mutagenesis to disrupt specific EXO1 interaction domains and nuclease activity.
- In vitro assays to assess DNA nicking and Holliday junction resolution activities.
Main Results:
- EXO1 directly interacts with both MLH1 (MutLγ) and MSH4 (MutSγ).
- A specific mutation (W371E) in EXO1 abolished its ability to activate MutLγ nicking by disrupting MutSγ interaction, without affecting EXO1's intrinsic nuclease function.
- Disrupting EXO1's dsDNA binding residues impaired MutSγ-MutLγ activity, while altering nuclease domain residues had no effect.
- EXO1's interaction with dsDNA and MutSγ is critical for activating MutLγ's endonuclease activity.
Conclusions:
- EXO1 acts as a structural scaffold, tethering the MutSγ-MutLγ complex to double-stranded DNA downstream of Holliday junction recognition.
- EXO1's role in activating MutLγ-mediated DNA cleavage is primarily through its interaction domains, not its intrinsic nuclease function.
- These findings highlight EXO1 as an integral component of the meiotic resolvase machinery, essential for promoting crossover formation.
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