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Updated: May 9, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
The Role of Skin-Gut-Lung Microbiome in Allergic Diseases
Insights
The rising incidence of allergic diseases, particularly in children, is linked to alterations in the skin, gut, and lung microbiome. Understanding these microbial interactions is key to addressing the atopic march and improving patient quality of life.
Area of Science:
- Immunology
- Microbiology
- Dermatology
Background:
- Allergic diseases, including atopic dermatitis (AD), food allergy (FA), allergic asthma (AA), and allergic rhinitis (AR), are increasing globally, impacting quality of life and imposing significant burdens.
- The "atopic march" (AM) describes the progression of allergic diseases from skin to gut to respiratory tract, often starting in infancy.
- Microbiome alterations are increasingly recognized as a critical factor in the development and progression of allergic diseases.
Purpose of the Study:
- To summarize the roles of skin, gut, and lung microbiota in AD, FA, and AA.
- To investigate the crosstalk effects of microbiota across different anatomical sites (microbiota-gut-skin, microbiota-gut-lung, microbiota-skin-lung axes).
- To identify limitations in current research and propose future research directions.
Main Methods:
- Literature review and synthesis of existing research on the human microbiome and allergic diseases.
- Analysis of epidemiological data and mechanistic studies.
- Exploration of inter-organ microbial communication pathways.
Main Results:
- The skin, gut, and lung microbiomes play distinct and interconnected roles in the pathogenesis of AD, FA, and AA.
- Evidence supports the existence and significance of the microbiota-gut-skin, microbiota-gut-lung, and microbiota-skin-lung axes in allergic disease development.
- Specific microbial alterations are associated with different stages and types of allergic conditions.
Conclusions:
- Microbiome dysbiosis is a central factor in the atopic march.
- Targeting microbial communities in the skin, gut, and lungs holds therapeutic potential for allergic diseases.
- Further research is needed to fully elucidate microbial mechanisms and develop effective interventions.
Abstract:
The incidence of allergic diseases has continued to rise in recent years, affecting approximately 20% of the worldwide population especially children. Allergic diseases are chronic immune diseases that greatly reduce the quality of life of patients, leading to great economic and medical burden. The epidemiological studies indicated that children who had atopic dermatitis (AD) in infancy are more likely to develop food allergy (FA) later, and then allergic asthma (AA) and allergic rhinitis (AR) in childhood, which was defined as the "atopic march" (AM). Anatomically, AM follows a spatial sequence from the skin to the gastrointestinal tract and then to the respiratory tract. Although the mechanisms underlying AM remain to be elucidated, microbiome alteration was considered as a critical cause. The skin and gut are the 2 main habitats of microbiota, and research in recent decades has also indicated the presence of bacteria in the lungs. We here not only summarized the roles of the skin, gut, lung microbiota in AD, FA, and AA, respectively, but also investigated the crosstalk effects of microbiota in each anatomic site on remote organs, including the microbiota-gut-skin axis, microbiota-gut-lung axis, and microbiota-skin-lung axis. In addition, we proposed the limitations of current research and the direction of future research in this field.
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