Measuring the Structure, Composition, and Change of Underwater Environments with Large-area Imaging

  • 1Scripps Institution of Oceanography, UC San Diego; nepeders@ucsd.edu.
  • 2Jacobs School of Engineering, UC San Diego.
  • 3Scripps Institution of Oceanography, UC San Diego; Jacobs School of Engineering, UC San Diego.
  • 4California Department of Fish and Wildlife.
  • 5Scripps Institution of Oceanography, UC San Diego; CSS Inc., Under contract to NOAA, National Ocean Service, National Centers for Coastal Ocean Science.
  • 6Scripps Institution of Oceanography, UC San Diego.
  • 7Physics Department, University of Miami.

Abstract

Digital imaging and processing technology have evolved to facilitate the expansion of large-area imaging surveys, which increase our capacity to study the status, trends, and dynamics of organisms living in subtidal habitats. By creating photo-realistic digital twins for ex situ analyses, these approaches allow small field teams to collect substantially more data than was previously possible. Here we present a four-step, large-area imaging survey pipeline and analysis methodology, including image collection, model construction, ecological analysis, and data curation, that has been developed and refined through experimentation over the past decade. Each step described has a consistent focus on the unique value of the original source imagery. While types of data extracted from large-area image surveys are vast, we include here workflows to extract ecological data for structural complexity, community composition, and demographic analyses valuable for monitoring and hypothesis-driven efforts. We additionally include recommendations for metadata standards, which complement the collection of large-area imaging data and support archival efforts facilitating transparency and collaboration between research groups.

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