Jove
Visualize
Contact Us

Related Concept Videos

Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

5.6K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.6K
The Tree of Life - Bacteria, Archaea, Eukaryotes02:40

The Tree of Life - Bacteria, Archaea, Eukaryotes

31.7K
The “tree of life” describes the evolution of life and the evolutionary relationships between organisms. The root of the tree is the common ancestor to all life on Earth. All other species radiate from this point, much like the branches of a tree. The numerous tips of these branches on the tree of life represent every living, or extant, species. Extinct species, which are species that no longer exist, can be found towards the center of the tree. Currently, these organisms, both...
31.7K
Phylogenetic Trees03:21

Phylogenetic Trees

44.9K
Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
44.9K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Automated genome mining predicts structural diversity and taxonomic distribution of peptide metallophores across bacteria.

eLife·2026
Same author

Computational pipeline reveals nature's untapped reservoir of halogenating enzymes.

bioRxiv : the preprint server for biology·2026
Same author

PanBGC: a pangenome-inspired framework for comparative analysis of biosynthetic gene clusters.

ISME communications·2025
Same author

Discovery and Heterologous Expression of the Soil Metagenome-Derived Lasso Peptide Metanodin with an Unprecedented Ring Structure.

Journal of natural products·2025
Same author

Ultra-deep long-read metagenomics captures diverse taxonomic and biosynthetic potential of soil microbes.

GigaScience·2025
Same author

antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation.

Nucleic acids research·2025
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Video

Updated: May 14, 2025

The ITS2 Database
16:17

The ITS2 Database

Published on: March 12, 2012

30.5K

AutoMLST2: a web server for phylogeny and microbial taxonomy.

Bita Pourmohsenin1, Arthur Wiese1, Nadine Ziemert1,2

  • 1Translational Genome Mining for Natural Products, Interfaculty Institute of Microbiology and Infection Medicine Tübingen (IMIT), Interfaculty Institute for Biomedical Informatics (IBMI), University of Tübingen, Tübingen, Baden-Württemberg 72076, Germany.

Nucleic Acids Research
|May 13, 2025
PubMed
Summary

AutoMLST2 offers automated microbial phylogenetic and taxonomic analysis for bacteria and archaea. This enhanced web server uses updated databases and computational tools for more flexible and efficient genome analysis.

More Related Videos

A Practical Guide to Phylogenetics for Nonexperts
12:00

A Practical Guide to Phylogenetics for Nonexperts

Published on: February 5, 2014

35.2K
Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine
10:40

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

Published on: December 22, 2017

10.4K

Related Experiment Videos

Last Updated: May 14, 2025

The ITS2 Database
16:17

The ITS2 Database

Published on: March 12, 2012

30.5K
A Practical Guide to Phylogenetics for Nonexperts
12:00

A Practical Guide to Phylogenetics for Nonexperts

Published on: February 5, 2014

35.2K
Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine
10:40

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

Published on: December 22, 2017

10.4K

Area of Science:

  • Microbiology
  • Evolutionary Biology
  • Bioinformatics

Background:

  • Accurate microbial taxonomy and evolution analysis are crucial for microbiology, ecology, and drug discovery.
  • Existing tools for phylogenetic reconstruction can be challenging to use.
  • AutoMLST is a popular, user-friendly tool for these analyses.

Purpose of the Study:

  • To enhance the AutoMLST web server for automated phylogenetic reconstruction and microbial taxonomy analysis.
  • To incorporate updated reference databases and computational tools.
  • To improve analytical flexibility and efficiency for bacterial and archaeal genomes.

Main Methods:

  • Integration of the Genome Taxonomy Database.
  • Extended support for archaeal genomes.
  • Implementation of customizable processing modes, containerization, and parallel computing.

Main Results:

  • AutoMLST2 provides an enhanced platform for phylogenetic and taxonomic analysis.
  • The updated server offers improved analytical flexibility and efficiency.
  • Containerization and parallel computing facilitate large-scale studies.

Conclusions:

  • AutoMLST2 offers an accessible and efficient solution for microbial genome analysis.
  • The updated tool supports researchers in microbiology, evolutionary ecology, and natural product discovery.
  • Continued development ensures up-to-date databases and workflows for phylogenetic studies.