Valosin-containing protein mediates DNA-dependent protein kinase activation in response to DNA topoisomerase II-associated DNA double-strand breaks
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Updated: May 15, 2025

Author Spotlight: Quantitative Detection of DNA Protein Crosslinks and Their Post-Translational Modifications
Published on: April 21, 2023
Ryo Sakasai1, Yumi Sunatani1, Tadashi Matsui1
1Department of Biochemistry I, Kanazawa Medical University, 1-1 Daigaku, Uchinada, Kahoku, Ishikawa 920-0293, Japan.
Abstract:
DNA topoisomerase II (Top2) induces DNA double-strand breaks (DSBs) to relieve the torsional stress associated with DNA replication and transcription. Etoposide (ETP), a Top2 poison in clinical use as an anticancer drug, traps Top2 reactive intermediates, resulting in the accumulation of DSBs, coupled with the formation of Top2-DNA protein crosslinks (Top2-DPC) at the ends of DSBs. Proteasome-dependent processing of trapped Top2 is necessary for some cellular responses to ETP-induced DSBs; however, the effect of suppressing Top2 removal on DSB repair is not well understood. In this study, we focused on valosin-containing protein (VCP), a proteasome mediator, to analyse the effect of the suppression of Top2-DPC resolution on the repair of ETP-induced DSBs. ETP-induced activation of DNA-dependent protein kinase (DNA-PK), a non-homologous end-joining (NHEJ) factor, was suppressed by VCP inhibitors, similar to the effects observed in proteasome-inhibited cells. Consistent with this finding, VCP inhibition suppressed repair activity in response to ETP-induced DSBs. Additionally, VCP inhibition delayed the resolution of ETP-induced Top2-DPC. These results suggest that the processing of trapped Top2 via the VCP-proteasome pathway is important for efficient DNA-PK activation and subsequent repair in response to ETP-induced DSBs.
Insights
Valosin-containing protein (VCP) aids in repairing DNA double-strand breaks (DSBs) caused by etoposide (ETP). Suppressing VCP delays Topoisomerase II (Top2) removal, hindering DNA repair and DNA-dependent protein kinase (DNA-PK) activation.
Area of Science:
- Molecular Biology
- DNA Repair Mechanisms
- Cancer Therapeutics
Background:
- DNA topoisomerase II (Top2) manages DNA torsional stress by inducing double-strand breaks (DSBs).
- Etoposide (ETP), an anticancer drug, traps Top2, causing DSBs and Top2-DNA protein crosslinks (Top2-DPC).
- Proteasome-mediated processing of trapped Top2 is crucial for cellular responses to ETP, but its role in DSB repair is unclear.
Purpose of the Study:
- To investigate the role of valosin-containing protein (VCP), a proteasome mediator, in resolving Top2-DNA protein crosslinks (Top2-DPC).
- To analyze the impact of suppressed Top2-DPC resolution on the repair of etoposide (ETP)-induced DNA double-strand breaks (DSBs).
Main Methods:
- Utilized VCP inhibitors to suppress Top2-DPC resolution.
- Assessed the activation of DNA-dependent protein kinase (DNA-PK), a key factor in non-homologous end-joining (NHEJ).
- Quantified the repair activity in response to ETP-induced DSBs under VCP inhibition.
Main Results:
- VCP inhibition suppressed the activation of DNA-dependent protein kinase (DNA-PK) following ETP treatment.
- Suppression of VCP led to reduced repair activity of ETP-induced DSBs.
- VCP inhibition delayed the resolution of ETP-induced Top2-DPC, indicating impaired Top2 removal.
Conclusions:
- The VCP-proteasome pathway is essential for efficient processing of trapped Top2.
- Efficient Top2 removal by VCP is critical for DNA-PK activation and subsequent DNA double-strand break repair.
- Targeting VCP may represent a strategy to modulate DNA repair in cancer therapy.
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