Related Experiment Video
Updated: May 16, 2025

Finite Element Modelling of a Cellular Electric Microenvironment
Published on: May 18, 2021
Explicitly accounting for background charges in a fast multipole method to simulate periodically replicated non
Bar Collignon1, Michel Masella1
1Laboratoire de Biologie Structurale et Radiobiologie, Service de Bioénergétique, Biologie Structurale et Mécanismes, Institut de Biologie et de Technologies de Saclay, CEA Saclay, F-91191 Gif sur Yvette Cedex, France.
Abstract:
We present two schemes coupling a Fast Multipole Method (FMM) (devoted to standard and polarizable force fields) and an approach to explicitly account for uniformly distributed background charges to simulate periodically replicated molecular systems with a net charge. These schemes rely on recent analytical relations allowing one to compute the electrostatic potential generated by a uniformly charged cube at any point in space. Whereas the first scheme considers the exact relations, the second one is based on grid interpolation of precomputed data for equal precision. Contrary to available approaches, our coupled schemes prevent the use of Ewald summation techniques as usually proposed in periodic FMM approaches. For a polarizable force field (based on induced dipole moments), we show the ability of our schemes to model molecular neutral and charged systems at the same level of accuracy as the Smooth Particle Mesh Ewald (SPME) approach, to predict usual properties. Moreover, our most efficient scheme, based on interpolating precomputed grid data, is already more efficient than SPME to simulate 3000 atom size periodic systems and one order of magnitude more efficient to compute electrostatic terms of periodic systems at the 100k atom size and above.
More Related Videos
07:31Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches
Published on: September 1, 2023
12:11Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
Published on: April 8, 2020
Related Concept Videos
Continuous Charge Distributions
The electric charge can also be subjected to an analogical...
Magnetic Field due to Moving Charges
Consider a point charge moving with a constant velocity. Like the electric field, the magnetic field at any point is directly proportional to the magnitude of the charge and inversely proportional to the square of the distance between the source point and the field point. However, unlike the electric field, the magnetic field is always perpendicular to the plane containing the line...
Motion Of A Charged Particle In A Magnetic Field
Ampere-Maxwell's Law: Problem-Solving
To solve the problem, we can use the equations from the analysis of an RC circuit and Maxwell's version of Ampère's law.
For the first part of...
Electric Field of a Charged Disk
The system's symmetry is in the cylindrical directions across the plane of the charge. As a result, the electric fields created by various surface charge elements nullify each other in the direction parallel to the surface. Thereby, the resulting electric field is perpendicular to the plane. Since the disk is...
Atomic Nuclei: Nuclear Magnetic Moment