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Non-contact, Label-free Monitoring of Cells and Extracellular Matrix using Raman Spectroscopy
Published on: May 29, 2012
Integrated analysis of restraint stress in rat serum using ATR-FTIR and Raman spectroscopy with Machine learning
Zehua Fan1, Chenyu Li2, Qiran Sun3
1Institute of Forensic Science, Fudan University, Shanghai 200032, People's Republic of China; College of Forensic Medicine, Hebei Key Laboratory of Forensic Medicine, Hebei Medical University, Shijiazhuang 050000, People's Republic of China; Department of Forensic Pathology, Institute of Forensic Science, Shanghai Key Laboratory of Forensic Medicine, Academy of Forensic Science, Shanghai 200063, People's Republic of China.
Abstract:
In forensic practice, accurately determining whether an individual has been subjected to prolonged restraint or assessing injuries resulting from restraint can be challenging. To address this, we explored a novel approach using attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy and Raman spectroscopy combined with machine learning to jointly identify restraint stress. We randomly assigned rats into three experimental groups: a restraint stress group (subjected to fasting and water deprivation), a control group (subjected to fasting and water deprivation without restraint), and a normal group. After collecting the serum spectra of the animals, a principal component analysis (PCA) model was established to explore the separation trends among the groups and to identify relevant characteristic peaks. Subsequently, a random forest (RF) model was established to compare the restraint stress group with the other two groups. The analysis identified key substances that indicated the presence of restraint stress: 1161 cm-1, 1167 cm-1 (anti-symmetric C-O-C stretch) and 980 cm-1, 976 cm-1, 974 cm-1 (-N+(CH3)3, antisymmetric stretch). And the RF model was used to compare the restraint stress groups at different time points, revealing substances that may help determine the duration of restraint stress: 1747 cm-1 (ester carbonyl band), 1626 cm-1 (β-pleated sheet), 1211 cm-1 (Amide III, -N+(CH3)3, antisymmetric stretch), 1180 cm-1 (phosphodiester), 1128 cm-1 (-C-C-), 1024 cm-1 (C-O stretching coupled with C-O bending) and 1389 cm-1, 1335 cm-1, 1321 cm-1 (Trp, α helix, phospholipids), 710 cm-1 (Polysaccharides), 1266 cm-1 (Amide Ⅲ), 1015 cm-1 (β-carotene). These findings suggest that ATR-FTIR and Raman spectroscopy together, when combined with machine learning, has significant potential as a powerful tool for analyzing and characterizing restraint stress, offering new insights and directions for future research in this area.
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