Rationally designed Pyrazolo[1,5-a]pyrimidines as dual inhibitors of CA IX/XII and CDK6: A novel approach for NSCLC
Mahmoud S Elkotamy1, Islam A Elkelesh1, Simone Giovannuzzi2
1Pharmaceutical Chemistry Department, Faculty of Pharmacy, Egyptian Russian University, Badr City, 11829, Cairo, Egypt.
Abstract:
Developing novel anticancer agents that target critical pathways in non-small cell lung cancer (NSCLC) presents a considerable challenge. This study synthesized 16 pyrazolo[1,5-a]pyrimidine derivatives with zinc-binding groups through molecular hybridization to achieve dual-target inhibition of tumor-associated carbonic anhydrase (CA) isoforms IX/XII and cyclin-dependent kinase 6 (CDK6). In-vitro assays indicated that sulfonamide-bearing compounds displayed enhanced CA inhibition, with compounds 7d, 11b, and 11d presenting Ki values of 11.2, 18.4, and 19.7 nM for CA IX, while compounds 11a and 11c exhibited Ki values of 14.8 and 8.7 nM for CA XII. Cytotoxicity assays conducted on NSCLC cell lines A549 and NCI-H1734 demonstrated that compounds 7c, 7d, 7i, and 11d exhibited superior activity relative to Roscovitine in both cell lines. While these compounds demonstrated limited inhibition of cyclin-dependent kinase 4 (CDK4), 7d and 11d effectively inhibited CDK6, with IC50 values of 0.054 and 0.069 microM, respectively, which are comparable to Palbociclib. Analyses of the cell cycle and apoptosis demonstrated a strong G1 arrest and a notable induction of apoptosis. Molecular docking confirmed essential binding interactions with CA IX/XII and CDK6, while in-silico ADMET predictions suggested favorable pharmacokinetics, despite potential toxicity concerns. Compounds 7d and 11d represent potential dual-target inhibitors for the treatment of NSCLC.
Insights
Researchers developed novel dual-target inhibitors for non-small cell lung cancer (NSCLC). These compounds target carbonic anhydrase (CA) IX/XII and cyclin-dependent kinase 6 (CDK6), showing promising cytotoxicity and cell cycle arrest in NSCLC cells.
Area of Science:
- Medicinal Chemistry
- Oncology
- Molecular Biology
Background:
- Non-small cell lung cancer (NSCLC) remains a significant therapeutic challenge.
- Targeting critical pathways like carbonic anhydrase (CA) isoforms IX/XII and cyclin-dependent kinase 6 (CDK6) offers potential for novel anticancer strategies.
Purpose of the Study:
- To synthesize and evaluate novel pyrazolo[1,5-a]pyrimidine derivatives as dual-target inhibitors of CA IX/XII and CDK6 for NSCLC treatment.
- To investigate the in-vitro anticancer activity, mechanism of action, and pharmacokinetic properties of these novel compounds.
Main Methods:
- Molecular hybridization was employed to design and synthesize 16 pyrazolo[1,5-a]pyrimidine derivatives incorporating zinc-binding groups.
- In-vitro assays included carbonic anhydrase inhibition, cytotoxicity against NSCLC cell lines (A549, NCI-H1734), kinase inhibition assays (CDK4, CDK6), cell cycle analysis, and apoptosis assays.
- Molecular docking and in-silico ADMET predictions were performed to assess binding interactions and pharmacokinetic profiles.
Main Results:
- Sulfonamide-containing derivatives showed potent inhibition of CA IX and CA XII, with specific compounds exhibiting nanomolar Ki values.
- Compounds 7c, 7d, 7i, and 11d demonstrated superior cytotoxicity against NSCLC cell lines compared to Roscovitine.
- Compounds 7d and 11d effectively inhibited CDK6 with IC50 values comparable to Palbociclib, inducing G1 cell cycle arrest and apoptosis.
Conclusions:
- Compounds 7d and 11d are identified as promising dual-target inhibitors of CA IX/XII and CDK6 for NSCLC.
- These agents exhibit favorable in-vitro efficacy and potential for favorable pharmacokinetics, warranting further investigation for NSCLC therapy.
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