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Updated: May 17, 2025

Resolving Affinity Purified Protein Complexes by Blue Native PAGE and Protein Correlation Profiling
Published on: April 1, 2017
ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes
Marcelo Baez1, Ruben Jimenez1, Luca Cernuzzi2,3
1Escola de Matemática Aplicada, Fundação Getúlio Vargas, Rio de Janeiro 22250-145, Brazil.
Abstract:
Protein-protein interactions (PPIs) are central to many cellular processes, and the assembly of proteins into complexes is essential for biological function. Clustering with overlapping neighborhood expansion (ClusterONE) has been successfully used to detect overlapping protein complexes in both weighted and unweighted PPI networks. Here, we present ClusterONE Web, a freely available, web-based tool that brings the functionality of ClusterONE into an accessible, user-friendly environment. The platform includes a database of preprocessed PPI datasets covering multiple organisms, reducing the need for manual data collection and preprocessing, while also allowing users to upload their own interaction data. Detected complexes are presented through an interactive interface, facilitating their exploration without requiring specialized software installation. The server also provides built-in Gene Ontology enrichment analysis to aid in the functional interpretation of identified complexes. ClusterONE Web is platform-independent and available at https://paccanarolab.org/clusteroneweb/.
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