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Published on: December 10, 2013
A Knowledge Graph for the Exploration of Human RSV Infection
Bisma Arshad1, Chu Ming Ko1, Mary McCabe1
1Wellcome-Wolfson Institute for Experimental Medicine, Belfast, United Kingdom.
Insights
Respiratory Syncytial Virus (RSV) causes severe infant infections. A new Knowledge Graph integrates decades of data to better understand RSV, aiding in identifying severe disease risks.
Area of Science:
- Virology
- Infectious Diseases
- Bioinformatics
Background:
- Respiratory Syncytial Virus (RSV) is a primary cause of infant acute lower respiratory tract infections (ALRTI).
- Current treatments for severe RSV are palliative, and predicting severe disease progression remains challenging.
- Knowledge Graphs (KG) offer a novel approach to synthesizing complex biological information.
Purpose of the Study:
- To consolidate over 60 years of heterogeneous information on RSV infection.
- To create a pilot RSV Knowledge Graph (KG) for enhanced data exploration.
- To identify interconnected nodes and pathways for a deeper understanding of RSV pathogenesis.
Main Methods:
- Literature review and data extraction from multiple heterogeneous sources.
- Construction of a pilot Knowledge Graph (KG) for RSV.
- Network analysis to identify key nodes and infer biological pathways.
Main Results:
- Successfully integrated >60 years of RSV-related data into a pilot KG.
- Identified highly interconnected nodes representing critical aspects of RSV infection.
- Inferred potential pathways contributing to RSV disease severity.
Conclusions:
- The pilot RSV KG provides a valuable resource for understanding RSV infection.
- This approach can aid in identifying individuals at risk for severe RSV disease.
- Further development of the KG can accelerate research into RSV prevention and treatment.
Abstract:
Despite decades of research and disease burden, RSV remains the most common cause of acute lower respiratory tract infection (ALRTI) in infants <2 years of age. New vaccines and an improved long lasting monoclonal antibody have been approved to protect individuals at increased risk of severe disease. However, treatment of severe RSV-mediated disease remains palliative, and we still cannot identify those individuals who will experience severe disease. Knowledge Graphs (KG) are an increasingly utilized methodology to aid in the exploration of literature surrounding important established and emerging human pathogens and their mechanisms of infection and disease. In this paper, we present a consolidation of >60 years of heterogeneous information relating to RSV infection into the creation of a pilot RSV KG. Integrating multiple sources, we identify highly interconnected nodes and inferred pathways, to aid in increasing understanding of human RSV infection.
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