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Published on: October 11, 2018
Screening for biomarkers of bronchopulmonary dysplasia: a bioinformatics analysis
Xiaoqun Zhang1,2, Linzhou Zhu3, Huawei Wang1
1Department of Neonatology, Children's Hospital of Soochow University, Suzhou, China.
Insights
This study reveals that miR-9-5p is upregulated in bronchopulmonary dysplasia (BPD) and targets GCH1, suggesting potential therapeutic strategies for this infant lung disease.
Area of Science:
- Pulmonary Medicine
- Molecular Biology
- Genetics
Background:
- Bronchopulmonary dysplasia (BPD) is a prevalent chronic respiratory disease in preterm infants, with increasing incidence and significant long-term health and economic impacts.
- Current understanding of BPD's molecular mechanisms is incomplete, and effective treatments remain limited.
- MicroRNAs (miRNAs) are crucial regulators of lung development and are implicated in BPD pathogenesis.
Purpose of the Study:
- To investigate the role of specific miRNAs, particularly miR-9-5p, in the molecular mechanisms of BPD.
- To identify potential molecular targets for BPD, focusing on the relationship between miR-9-5p and guanosine triphosphate cyclohydrolase 1 (GCH1).
Main Methods:
- Differential gene and miRNA expression analysis using the Gene Expression Omnibus (GEO) database (GSE108755 dataset).
- Establishment of a hyperoxia-induced cell model to study miR-9-5p expression.
- Bioinformatic prediction of miR-9-5p targets, functional analysis, and protein-protein interaction network construction.
- Experimental validation including RT-qPCR, western blotting, and assays for reactive oxygen species (ROS), malondialdehyde (MDA), and Fe2+.
Main Results:
- miR-9-5p was found to be upregulated in infants with BPD and in the hyperoxia-induced cell model.
- GCH1 was identified as a target gene of miR-9-5p and was downregulated in the cell model.
- Hyperoxia exposure led to increased levels of ROS, MDA, and Fe2+, indicative of oxidative stress and ferroptosis.
Conclusions:
- miR-9-5p and its target GCH1 show potential as therapeutic targets for BPD.
- The findings enhance understanding of BPD's molecular basis, supporting diagnostic and therapeutic strategies.
- Further research is warranted to elucidate the miR-9-5p/GCH1 regulatory axis in BPD models and patients.
Background:
Bronchopulmonary dysplasia (BPD) is a common chronic respiratory disease in preterm infants, and its incidence has gradually increased with advances in medical technology. BPD is associated with multiple complications, significantly impacting the quality of life of affected infants and imposing substantial economic burdens on families and society. Currently, the molecular mechanisms of BPD are not fully understood, and effective treatments are lacking. MicroRNAs (miRNAs), as important gene regulatory molecules, play a critical role in lung development and BPD. This study aims to investigate the potential role of miRNAs in BPD, with a particular focus on miR-9-5p and guanosine triphosphate cyclohydrolase 1 (GCH1).
Methods:
Differential expression analysis of genes and miRNAs was conducted using the Gene Expression Omnibus (GEO) database. A hyperoxia-induced injury cell model was constructed to examine the expression of miR-9-5p. Target genes of miR-9-5p were predicted using online databases, followed by functional and protein interaction network analyses. In addition, cell culture, real-time quantitative polymerase chain reaction (RT-qPCR), western blotting, reactive oxygen species (ROS) level detection, malondialdehyde (MDA) assay, and Fe2+ detection experiments were performed.
Results:
In the GSE108755 dataset, miR-9-5p was found to be upregulated in the blood of infants with BPD. In the hyperoxia-induced injury cell model, miR-9-5p expression was significantly increased. GCH1 was identified as a target gene through intersection with ferroptosis regulatory gene sets. In the cell model, GCH1 expression was markedly downregulated, while ROS, MDA, and Fe2+ levels were significantly elevated.
Conclusions:
This study provides new insights into the molecular mechanisms of BPD, suggesting that miR-9-5p and GCH1 may serve as potential therapeutic targets for BPD. The findings contribute to a deeper understanding of the molecular basis of BPD, providing theoretical and experimental support for its diagnosis and treatment strategies. Future research will further explore the regulatory relationship between miR-9-5p and GCH1 and their roles in animal models, cell models, and clinical patients.
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