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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
Toward a Domain-Overarching Metadata Schema for Making Health Research Studies FAIR (Findable, Accessible,
Haitham Abaza1, Aliaksandra Shutsko2, Sophie A I Klopfenstein3
1Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany.
A new metadata schema (MDS) enhances data findability, accessibility, interoperability, and reusability (FAIR) for health research. This schema improves data sharing across clinical, epidemiological, and public health studies.
Area of Science:
- Health Informatics
- Data Science
- Epidemiology
Background:
- Implementing FAIR principles in health research faces challenges, particularly with data interoperability across diverse sources.
- Clinical trial registries capture study metadata, but many epidemiological and public health studies lack detailed, accessible information.
- Improved data sharing from these studies is crucial for advancing understanding of diseases and risk factors.
Purpose of the Study:
- To develop a tailored metadata schema (MDS) for standardized publication of health study metadata within NFDI4Health and other services.
- To enhance the FAIRness of metadata from clinical, epidemiological, and public health research.
- To ensure compatibility with existing metadata models for improved interoperability.
Main Methods:
- Developed an MDS based on DataCite, ClinicalTrials.gov, and international standards, initially by the NFDI4Health Task Force COVID-19.
- Extended the MDS modularly with generic and use-case-specific items (nutritional epidemiology, chronic diseases, record linkage) and mapped it to external schemas.
- Utilized ART-DECOR for transformation into a machine-readable format, facilitating editing, maintenance, and versioning.
Main Results:
- The MDS is implemented in NFDI4Health services, structuring and exchanging study metadata.
- Version 3.3 includes 220 metadata items across 5 modules, covering generic and domain-specific information.
- Mappings to clinical trial registries and other resources facilitate metadata integration and interoperability.
Conclusions:
- Implementation in NFDI4Health services improves data FAIRness for clinical, epidemiological, and public health research.
- The schema's generic nature and interoperability make it transferable to adjacent domains, benefiting a wider user community.
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