Related Experiment Video
Updated: Aug 21, 2026

Unraveling the Unseen Players in the Ocean - A Field Guide to Water Chemistry and Marine Microbiology
Published on: November 5, 2014
Functional biogeography of marine microbial heterotrophs
Emily J Zakem1, Jesse McNichol2,3, J L Weissman4,5,6
1Department of Global Ecology, Carnegie Institution for Science, Stanford, CA, USA.
Abstract:
Heterotrophic bacteria and archaea ("heteroprokaryotes") drive global carbon cycling, but how to quantitatively organize their functional complexity remains unclear. We generated a global-scale understanding of marine heteroprokaryotic functional biogeography by synthesizing genetic sequencing data with a mechanistic marine ecosystem model. We incorporated heteroprokaryotic diversity into the trait-based model along two axes: substrate lability and growth strategy. Using genetic sequences along three ocean transects, we compiled 21 heteroprokaryotic guilds and estimated their degree of optimization for rapid growth (copiotrophy). Data and model consistency indicated that gradients in grazing and substrate lability predominantly set biogeographical patterns, and we identified deep-ocean "slow copiotrophs" whose ecological interactions control the surface accumulation of dissolved organic carbon.
Related Concept Videos
Marine Microbial Ecology
Deep Sea Microbial Ecology
Microbial Mats
Microbial Interactions: Competition
Introduction to Microbial Ecology
Freshwater Microbial Ecology

