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Updated: Sep 20, 2025

Streamlined Sampling and Cultivation of the Pelagic Cosmopolitan Larvacean, Oikopleura dioica
Published on: June 16, 2020
The contribution of pelagic fungi to ocean biomass
Eva Breyer1, Constanze Stix2, Sophie Kilker2
1Fungal and Biogeochemical Oceanography Group, College of Oceanography and Ecological Science, Shanghai Ocean University, Nanhui New City, 201306 Shanghai, China; Fungal and Biogeochemical Oceanography Group, Department of Functional and Evolutionary Ecology, University of Vienna, 1030 Vienna, Austria.
Abstract:
Metagenomic analysis has recently unveiled the widespread presence of pelagic fungi in the global ocean, yet their quantitative contribution to carbon stocks remains elusive, hindering their incorporation into biogeochemical models. Here, we revealed the biomass of pelagic fungi in the open-ocean water column by combining ergosterol extraction, Calcofluor-White staining, catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH), and microfluidic mass sensor techniques. We compared fungal biomass with the biomass of other more studied microbial groups in the ocean such as archaea and bacteria. Globally, fungi contributed 0.32 Gt C (CI: 0.19-0.46), refining previous uncertainty estimates from two orders of magnitude to less than one. While fungal biomass was lower than that of bacteria, it exceeded that of the archaea (archaea:fungi:bacteria biomass ratio of 1:9:44). Collectively, our findings reveal the important contribution of fungi to open-ocean biomass and, consequently, the marine carbon cycle, emphasizing the need for their inclusion in biogeochemical models.
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