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Heterophily-Aware Representation Learning on Heterogeneous Graphs.

Jintang Li, Zheng Wei, Yuchang Zhu

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    |May 26, 2025
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    This study introduces Hetero$^{2}$2Net, a novel heterophily-aware heterogeneous graph neural network (HGNN). It effectively handles complex real-world graphs, outperforming existing methods in node classification tasks.

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    Area of Science:

    • Graph Neural Networks
    • Machine Learning
    • Data Mining

    Background:

    • Real-world graphs are complex, featuring global heterogeneity and local heterophily.
    • Existing graph neural networks (GNNs) struggle with heterophily, especially in heterogeneous graphs.
    • Heterogeneous graph neural networks (HGNNs) often inherit limitations from GNNs, failing to generalize to heterophilic graphs.

    Purpose of the Study:

    • To investigate heterophily in heterogeneous graphs.
    • To propose metrics for quantifying heterophily in heterogeneous graphs.
    • To develop a heterophily-aware HGNN capable of handling both homophilic and heterophilic heterogeneous graphs.

    Main Methods:

    • Identified heterophily in heterogeneous graphs using metapaths.
    • Proposed two quantitative metrics for heterophily levels.
    • Developed Hetero$^{2}$2Net, incorporating masked metapath and label prediction tasks.
    • Evaluated on five real-world heterogeneous graph benchmarks.

    Main Results:

    • Empirical investigations revealed HGNNs struggle with heterophilic heterogeneous graphs.
    • Hetero$^{2}$2Net demonstrated superior performance in semi-supervised node classification.
    • The model successfully scaled to a large industrial-scale graph (13M nodes, 157M edges).

    Conclusions:

    • Heterophily is a critical challenge in heterogeneous graph analysis.
    • Hetero$^{2}$2Net effectively addresses heterophily in HGNNs.
    • The proposed model offers a scalable and effective solution for complex real-world heterogeneous graphs.