The polyadenylase PAPI is required for virulence plasmid maintenance in pathogenic bacteria
Katherine Schubert1, Jessica Zhang2,3, Michele E Muscolo4,5
1Department of Molecular, Cell, and Developmental Biology, UC Santa Cruz, Santa Cruz, California, United States of America.
Plos Pathogens
|May 27, 2025
Summary
The chromosomal gene pcnB, encoding polyadenylase PAP I, is crucial for maintaining virulence plasmids in Yersinia and Shigella pathogens. This gene stabilizes plasmids, boosts antibiotic resistance, and enhances bacterial virulence.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Pathogenic bacteria utilize plasmid-encoded virulence factors for infection, with their expression often linked to plasmid replication and copy number.
- The type III secretion system (T3SS) is essential for Yersinia virulence, encoded on the pYV virulence plasmid, and its expression is regulated by temperature and gene dosage.
- The mechanisms governing elevated plasmid copy number and stability at host temperatures remain poorly understood.
Purpose of the Study:
- To investigate the role of the chromosomal gene pcnB, encoding polyadenylase PAP I, in regulating virulence plasmid replication and stability in pathogenic bacteria.
- To determine the impact of pcnB/PAP I on T3SS expression, bacterial virulence, and the maintenance of antimicrobial resistance (AMR) plasmids.
- To explore the broader implications of pcnB/PAP I in the spread and stabilization of virulence and AMR plasmids across bacterial pathogens.
Main Methods:
- Investigated the function of the pcnB gene and its encoded PAP I enzyme in Yersinia and Shigella species.
- Assessed the effect of pcnB/PAP I on pYV plasmid copy number (PCN) and stability at different temperatures.
- Evaluated the impact of pcnB/PAP I on T3SS gene expression, bacterial virulence in a mouse model, and the maintenance of antimicrobial resistance plasmids.
Main Results:
- The chromosomal gene pcnB/PAP I is essential for regulating pYV plasmid copy number, maintaining pYV stability, robust T3SS activity, and Yersinia virulence.
- pcnB/PAP I is also required for robust T3SS expression in Shigella flexneri and for maintaining antimicrobial resistance plasmids, increasing antibiotic resistance tenfold.
- pcnB/PAP I promotes the spread and stabilization of sRNA-regulated virulence and AMR plasmids in bacterial pathogens.
Conclusions:
- The pcnB/PAP I enzyme plays a critical role in stabilizing virulence and antimicrobial resistance plasmids in pathogenic bacteria like Yersinia and Shigella.
- This stabilization directly impacts bacterial virulence and antibiotic resistance by ensuring adequate gene dosage of plasmid-encoded traits.
- The widespread identification of pcnB/PAP I across bacterial species suggests its significant, yet underappreciated, role in bacterial pathogenesis and the dissemination of resistance genes.
Related Concept Videos
Plasmids
162
Plasmids are extrachromosomal DNA molecules found in bacteria, archaea, and some eukaryotic microbes like yeast. These small, circular DNA structures typically contain fewer than 30 genes, although some may exist linearly. Plasmids vary in their number within a cell, known as copy number. Single-copy plasmids are present in one copy per cell and multi-copy plasmids are present in multiple copies, reaching over 100 copies per cell.Plasmids usually replicate independently of the chromosomal DNA...
162
Coordination of Gene Expression Processes in Bacteria
167
The DNA replication, transcription, and translation processes are intricately coupled in bacteria, allowing efficient gene expression and rapid protein synthesis. While this physical and functional coordination is advantageous, it introduces challenges that bacteria overcome through specific regulatory mechanisms.Coupling of Replication, Transcription, and TranslationThe coupling of replication, transcription, and translation is a hallmark of bacterial gene expression. As the replisome unwinds...
167
Stringent Response in E. coli
62
Bacterial growth is closely tied to nutrient availability, with cells proliferating exponentially under favorable conditions and entering a stationary phase when resources become scarce. This transition is mediated by a regulatory mechanism known as the stringent response, which allows bacteria to adapt to nutrient deprivation by modulating gene expression and metabolic activity.During nutrient scarcity, intracellular amino acid levels decline. It results in the accumulation of uncharged tRNAs...
62
Bacterial RNA Polymerase
30.6K
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
30.6K
Fimbriae, Pili, and Axial Filaments
398
Fimbriae and pili are specialized bacterial surface structures that play pivotal roles in adhesion, genetic exchange, and motility. Composed primarily of pilin protein, these hairlike appendages are crucial for bacterial survival and pathogenicity in various environments.Fimbriae: Adhesion and PathogenicityFimbriae are fine, filamentous structures measuring 2–10 nanometers in diameter and are densely distributed on the bacterial cell surface. They facilitate bacterial adhesion to abiotic...
398
Mechanism of Conjugation
165
Bacterial conjugation is a mechanism of horizontal gene transfer that enables the exchange of genetic material between bacterial cells through direct contact. This process is facilitated by a donor cell carrying a conjugative plasmid, which encodes genes necessary for pilus formation, DNA replication, and transfer. The conjugative plasmid plays a central role in initiating and executing the transfer of genetic material.The tra region of the conjugative plasmid encodes proteins responsible for...
165


