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Updated: Sep 20, 2025

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Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
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Variable expressivity of a transmitted pathogenic KAT6B variant
Ninna Bager Rasmussen1, Pernille Axél Gregersen2, Trine Østergaard Nielsen1
1Department of Clinical Genetics, Aarhus University Hospital, Aarhus, Denmark.
European Journal of Medical Genetics
|May 29, 2025
Summary
Pathogenic variants in Lysine acetyltransferase 6B (KAT6B) cause rare genetic disorders. This study identifies a new KAT6B variant in a Danish family, showing it can be inherited and cause variable symptoms, expanding the known KAT6B disorder spectrum.
Area of Science:
- Genetics
- Molecular Biology
- Clinical Medicine
Background:
- Pathogenic variants in Lysine acetyltransferase 6B (KAT6B) are linked to Say-Barber-Biesecker-Young-Simpson syndrome (SBBYSS) and Genitopatellar syndrome (GPS).
- Recent findings suggest KAT6B disorders represent a spectrum with overlapping clinical features.
- KAT6B variants are predominantly de novo, with few reported inherited cases.
Purpose of the Study:
- To report clinical and molecular findings of a novel pathogenic KAT6B variant in a three-generation family.
- To investigate the inheritance pattern and phenotypic variability of KAT6B disorders.
- To contribute to the understanding of KAT6B disorders as a broad clinical spectrum.
Main Methods:
- Clinical evaluation of affected individuals across three generations.
- Molecular genetic analysis to identify and confirm the KAT6B variant.
- Segregation analysis within the family to establish inheritance patterns.
Main Results:
- A previously unreported pathogenic KAT6B variant was identified and segregated within the family.
- The variant was associated with a phenotype distinct from classic SBBYSS or GPS.
- Significant variable expressivity and intra-familial variability were observed, including inheritance from mildly affected parents.
Conclusions:
- KAT6B disorders should be viewed as a broad clinical spectrum, encompassing phenotypes beyond SBBYSS and GPS.
- Pathogenic KAT6B variants can be inherited from parents with mild or unrecognized symptoms.
- This study underscores the importance of considering familial inheritance and variable expressivity in KAT6B-related disorders.
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