Designed miniproteins potently inhibit and protect against MERS-CoV

Robert J Ragotte1, M Alejandra Tortorici2, Nicholas J Catanzaro3

  • 1Department of Biochemistry, University of Washington, Seattle, WA 98195, USA; Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.

Cell Reports
|June 1, 2025
PubMed

Insights

Researchers designed novel miniproteins to neutralize Middle East respiratory syndrome coronavirus (MERS-CoV). These miniproteins target conserved sites on the MERS-CoV spike protein, offering broad protection against variants and blocking viral entry.

Area of Science:

  • Virology
  • Protein Engineering
  • Immunology

Background:

  • Middle East respiratory syndrome coronavirus (MERS-CoV) is a zoonotic virus with high human case-fatality.
  • Current therapeutic and vaccine options for MERS-CoV are limited for both human and camel populations.

Purpose of the Study:

  • To computationally design novel miniproteins targeting the MERS-CoV spike glycoprotein.
  • To evaluate the broad neutralization capacity and mechanism of action of these miniproteins.

Main Methods:

  • Computational design of monomeric and homo-oligomeric miniproteins.
  • Affinity assessment for binding to MERS-CoV spike (S) glycoprotein.
  • Neutralization assays against diverse MERS-CoV S variants.
  • In vivo efficacy studies using intranasal administration in a mouse model.

Main Results:

  • Designed miniproteins exhibit high-affinity binding to the MERS-CoV S glycoprotein.
  • Miniproteins broadly neutralize MERS-CoV variants by targeting a conserved receptor-binding domain (RBD) site.
  • Miniproteins block viral attachment by competing with dipeptidylpeptidase 4 (DPP4) receptor binding.
  • Intranasal administration of a lead miniprotein conferred prophylactic protection in a MERS-CoV mouse challenge model.

Conclusions:

  • Computationally designed miniproteins represent a promising therapeutic strategy against MERS-CoV.
  • These miniproteins offer broad-spectrum neutralization and block viral entry via a conserved mechanism.
  • Further clinical development of these miniproteins is warranted as a next-generation countermeasure against MERS-CoV.